ReferenceTimepointRegistration (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- spim.process.interestpointregistration.optimizationtypes.GlobalOptimizationType
- - spim.process.interestpointregistration.optimizationtypes.ReferenceTimepointRegistration

public class ReferenceTimepointRegistration
extends GlobalOptimizationType

Field Summary
- Fields inherited from class spim.process.interestpointregistration.optimizationtypes.GlobalOptimizationType
  considerTimePointsAsUnit

Constructor Summary

Constructors
Constructor and Description
`ReferenceTimepointRegistration(SpimData2 spimData, List<ViewId> viewIdsToProcess, List<ChannelProcess> channelsToProcess, TimePoint referenceTimepoint, boolean considerTimePointsAsUnit)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`List<GlobalOptimizationSubset>`	`assembleAllViewPairs()`
`protected static HashSet<ViewId>`	`assembleFixedTiles(SpimData2 spimData, List<ViewId> viewIdsToProcess, List<ChannelProcess> channelsToProcess, TimePoint referenceTimepoint)` All tiles of the reference timepoint are fixed, nothing else
`ViewId`	`getMapBackReferenceTile(GlobalOptimizationSubset set)` In case there is one tile which would be reference tile, return this one - can be null.
`TimePoint`	`getReferenceTimepoint()`

Methods inherited from class spim.process.interestpointregistration.optimizationtypes.GlobalOptimizationType
addCorrespondences, clearExistingCorrespondences, considerTimePointsAsUnit, getAllViewPairs, getChannelProcessForChannel, getFixedTiles, getInterestPoints, getMapBackModel, getSpimData, isFixedTile, isValid, saveCorrespondences, setFixedTiles, setMapBackModel, setMapBackReferenceTile, setMapBackReferenceTiles

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReferenceTimepointRegistration

public ReferenceTimepointRegistration(SpimData2 spimData,
                                      List<ViewId> viewIdsToProcess,
                                      List<ChannelProcess> channelsToProcess,
                                      TimePoint referenceTimepoint,
                                      boolean considerTimePointsAsUnit)

Method Detail
- assembleFixedTiles
```
protected static HashSet<ViewId> assembleFixedTiles(SpimData2 spimData,
                                                    List<ViewId> viewIdsToProcess,
                                                    List<ChannelProcess> channelsToProcess,
                                                    TimePoint referenceTimepoint)
```
  All tiles of the reference timepoint are fixed, nothing else
  
  Parameters:
  
  spimData -
  
  viewIdsToProcess -
  
  channelsToProcess -
  
  referenceTimepoint -
  
  Returns:
- getReferenceTimepoint
```
public TimePoint getReferenceTimepoint()
```
- assembleAllViewPairs
```
public List<GlobalOptimizationSubset> assembleAllViewPairs()
```
  Specified by:
  
  assembleAllViewPairs in class GlobalOptimizationType
  
  Returns:
  
  - assembles the list of subsets and points for the registration
- getMapBackReferenceTile
```
public ViewId getMapBackReferenceTile(GlobalOptimizationSubset set)
```
  Description copied from class: GlobalOptimizationType
  
  In case there is one tile which would be reference tile, return this one - can be null. This will be used to map the entire acquisition back to this frame as good as possible if the user asks for not fixing the first tile but still wants it roughly oriented like this
  
  Overrides:
  
  getMapBackReferenceTile in class GlobalOptimizationType
  
  Parameters:
  
  set - - the current set that will be globally optimized
  
  Returns:

Class ReferenceTimepointRegistration

Field Summary

Fields inherited from class spim.process.interestpointregistration.optimizationtypes.GlobalOptimizationType

Constructor Summary

Method Summary

Methods inherited from class spim.process.interestpointregistration.optimizationtypes.GlobalOptimizationType

Methods inherited from class java.lang.Object

Constructor Detail

ReferenceTimepointRegistration

Method Detail

assembleFixedTiles

getReferenceTimepoint

assembleAllViewPairs

getMapBackReferenceTile