Deprecated List (Fiji Javadocs 0-SNAPSHOT API)

Deprecated Interfaces
Interface and Description

bdv.viewer.VisibilityAndGrouping.UpdateListener

Deprecated Interfaces
Interface and Description
bdv.viewer.VisibilityAndGrouping.UpdateListener

Deprecated Classes
Class and Description
bigwarp.BigWarpActions.SaveWarpedAction
bdv.viewer.BigWarpConverterSetupWrapper
bdv.tools.boundingbox.BoundingBoxDialog Use `TransformedBoxSelectionDialog` instead.
bdv.tools.brightness.BrightnessDialog
fiji.util.DoubleArray Use `org.scijava.util.DoubleArray` in `org.scijava:scijava-common`.
sc.fiji.snt.gui.EnhancedGenericDialog
sc.fiji.snt.gui.EnhancedWaitForUserDialog
bdv.ij.ExportSpimFusionPlugIn
bdv.ij.ExportSpimSequencePlugIn
bdv.ij.export.FixAbsolutePathsInHdf5Partitions
fiji.util.FloatArray Use `org.scijava.util.FloatArray` in `org.scijava:scijava-common`.
bdv.ij.export.imgloader.FusionImageLoader
bdv.ij.export.FusionResult
bdv.ij.export.imgloader.HuiskenImageLoader
fiji.util.IntArray Use `org.scijava.util.IntArray` in `org.scijava:scijava-common`.
bdv.ij.export.imgloader.LegacyStackImageLoader
ij3d.Mesh_Maker Use `Mesh_Maker` instead.
ij3d.MeshMaker Use `MeshMaker` instead.
bdv.ij.export.Scripting
bdv.ij.export.SetupAggregator
bdv.tools.brightness.SetupAssignments
sc.fiji.snt.plugin.ij1.Sholl_Analysis This IJ1 plugin has now been replaced by its IJ2 counterpart. Kept here for backwards compatibility
sc.fiji.snt.plugin.ij1.Sholl_Utils This IJ1 plugin is no longer needed when using IJ2 commands. Kept here for backwards compatibility
sc.fiji.snt.gui.ShollAnalysisDialog
sc.fiji.snt.gui.ShollAnalysisDialog.ShollPoint
sc.fiji.snt.gui.ShollAnalysisDialog.ShollResults
sc.fiji.snt.plugin.ij1.ShollAnalysisPlugin
sc.fiji.snt.plugin.ij1.ShollOptions
bdv.viewer.state.SourceGroup
bdv.viewer.state.SourceState
bdv.ij.export.SpimRegistrationSequence
bdv.ij.export.imgloader.StackImageLoader
trainableSegmentation.Trainable_Segmentation
bdv.viewer.state.ViewerState
bdv.ij.export.ViewSetupWrapper
bdv.viewer.VisibilityAndGrouping This is not necessary anymore, because `ViewerState` can be modified directly. (See `ViewerPanel.state()`.) Manage visibility and currentness of sources and groups, as well as grouping of sources, and display mode.
bdv.viewer.VisibilityAndGrouping.Event
bdv.tools.VisibilityAndGroupingDialog

Deprecated Fields
Field and Description
bdv.viewer.NavigationActions.ALIGN_PLANE
plugin.Lasso.BLOW
plugin.Lasso.LASSO
plugin.Lasso.MAX_TOOL
plugin.Lasso.MIN_LASSO
trainableSegmentation.Weka_Segmentation.SET_HOMOGENIZATION use SET_BALANCE instead
sc.fiji.snt.Path.SWC_END_POINT
sc.fiji.snt.Path.SWC_FORK_POINT

Deprecated Methods
Method and Description
sc.fiji.snt.Path.addAsLinesTo3DViewer(Image3DUniverse, Color3f, ImagePlus)
sc.fiji.snt.Path.addAsLinesTo3DViewer(Image3DUniverse, Color, ImagePlus)
sc.fiji.snt.Path.addDiscsTo3DViewer(Image3DUniverse, Color3f, ImagePlus)
sc.fiji.snt.Path.addDiscsTo3DViewer(Image3DUniverse, Color, ImagePlus)
bdv.viewer.ViewerPanel.addGroup(SourceGroup) Modify `ViewerPanel.state()` directly
ij3d.Image3DUniverse.addMesh(List<Point3f>, Color3f, String, int) This method will not be supported in the future. Use addTriangleMesh instead.
ij3d.Image3DUniverse.addMesh(List, Color3f, String, float, int) This method will not be supported in the future. The specified 'scale' will be ignored, and the applied scale will be calculated automatically from the minimum and maximum coordinates of the specified mesh. Use addTriangleMesh instead.
ij3d.Image3DUniverse.addOctree(String, String) The octree methods will be outsourced into a different plugin.
bdv.viewer.InteractiveDisplayCanvas.addOverlayRenderer(OverlayRenderer) Use `overlays().add(renderer)` instead
ij3d.ContentInstant.addPointListPoint(Point3d)
ij3d.Content.addPointListPoint(Point3d)
bdv.viewer.ViewerPanel.addRenderTransformListener(TransformListener<AffineTransform3D>) Use `renderTransformListeners().add( listener )`.
bdv.viewer.ViewerPanel.addRenderTransformListener(TransformListener<AffineTransform3D>, int) Use `renderTransformListeners().add( index, listener )`.
bdv.ij.export.SetupAggregator.addSetup(SpimRegistrationSequence, int, int[][], int[][])
bdv.ij.export.SetupAggregator.addSetup(SpimRegistrationSequence, int, String, String)
bdv.ij.export.SetupAggregator.addSetups(FusionResult, int[][], int[][])
bdv.ij.export.SetupAggregator.addSetups(FusionResult, String, String)
bdv.ij.export.SetupAggregator.addSetups(SpimRegistrationSequence, int[][], int[][])
bdv.ij.export.SetupAggregator.addSetups(SpimRegistrationSequence, String, String)
bdv.viewer.ViewerPanel.addSource(SourceAndConverter<?>) Modify `ViewerPanel.state()` directly
bdv.viewer.ViewerPanel.addSources(Collection<SourceAndConverter<?>>) Modify `ViewerPanel.state()` directly
bdv.viewer.VisibilityAndGrouping.addSourceToGroup(int, int)
sc.fiji.snt.Path.addTo3DViewer(Image3DUniverse, Color3f, ImagePlus)
sc.fiji.snt.Path.addTo3DViewer(Image3DUniverse, Color, ImagePlus)
sc.fiji.snt.viewer.Viewer2D.addTree(Tree) Use `Viewer2D.add(Tree)` instead
sc.fiji.snt.viewer.Viewer3D.addTrees(Collection<Tree>, boolean) use `Viewer3D.addTrees(Collection, String)` instead
bdv.viewer.VisibilityAndGrouping.addUpdateListener(VisibilityAndGrouping.UpdateListener)
bdv.util.PlaceHolderOverlayInfo.addVisibilityChangeListener(PlaceHolderOverlayInfo.VisibilityChangeListener) Use `visibilityChangeListeners().add(listener)` instead.
bdv.viewer.NavigationActions.alignPlaneAction(ViewerPanel, ViewerPanel.AlignPlane, String...)
bdv.viewer.NavigationActions.alignPlanes(ViewerPanel)
sc.fiji.snt.plugin.ij1.Sholl_Analysis.analyze2D(int, int, double[], double, int, int, ImagePlus)
sc.fiji.snt.plugin.ij1.Sholl_Analysis.analyze3D(int, int, int, double[], ImagePlus)
bunwarpj.MiscTools.applyTransformationToSource(ImagePlus, ImagePlus, BSplineModel, BSplineModel, BSplineModel, int, double[][], double[][])
bunwarpj.MiscTools.applyTransformationToSource(ImagePlus, ImagePlus, BSplineModel, int, double[][], double[][])
mpicbg.models.SpringMesh.calculateForceAndSpeed(ErrorStatistic) Remains for legacy compatibility
ij3d.Image3DUniverse.cancelOctree() The octree methods will be outsourced into a different plugin.
sc.fiji.snt.PathAndFillManager.canvasResized()
spim.vecmath.Tuple4d.clamp(float, float) Use clamp(double,double) instead
spim.vecmath.Tuple3d.clamp(float, float) Use clamp(double,double) instead
spim.vecmath.Tuple3d.clamp(float, float, Tuple3d) Use clamp(double,double,Tuple3d) instead
spim.vecmath.Tuple4d.clamp(float, float, Tuple4d) Use clamp(double,double,Tuple4d) instead
spim.vecmath.Tuple4d.clampMax(float) Use clampMax(double) instead
spim.vecmath.Tuple3d.clampMax(float) Use clampMax(double) instead
spim.vecmath.Tuple3d.clampMax(float, Tuple3d) Use clampMax(double,Tuple3d) instead
spim.vecmath.Tuple4d.clampMax(float, Tuple4d) Use clampMax(double,Tuple4d) instead
spim.vecmath.Tuple4d.clampMin(float) Use clampMin(double) instead
spim.vecmath.Tuple3d.clampMin(float) Use clampMin(double) instead
spim.vecmath.Tuple3d.clampMin(float, Tuple3d) Use clampMin(double,Tuple3d) instead
spim.vecmath.Tuple4d.clampMin(float, Tuple4d) Use clampMin(double,Tuple4d) instead
mpi.fruitfly.registration.CrossCorrelation2D.computeCrossCorrelation(double, double, boolean) This method is only single threaded, use computeCrossCorrelationMT instead
sc.fiji.snt.PathAndFillManager.contentAdded(Content)
sc.fiji.snt.PathAndFillManager.contentChanged(Content)
sc.fiji.snt.PathAndFillManager.contentRemoved(Content)
sc.fiji.snt.PathAndFillManager.contentSelected(Content)
bdv.viewer.render.AccumulateProjectorFactory.createAccumulateProjector(ArrayList<VolatileProjector>, ArrayList<Source<?>>, ArrayList<? extends RandomAccessible<? extends A>>, RandomAccessibleInterval<A>, int, ExecutorService) Use `AccumulateProjectorFactory.createProjector(List, List, List, RandomAccessibleInterval, int, ExecutorService)` instead.
isosurface.MeshExporter.createDXF(Collection)
bdv.ij.export.Scripting.createFusionResult(SpimRegistrationSequence, String, String, int, double, double, Map<Integer, AffineTransform3D>)
sc.fiji.snt.analysis.graph.GraphUtils.createGraph(Collection<SWCPoint>, boolean)
sc.fiji.snt.analysis.graph.GraphUtils.createGraph(Tree)
bdv.ij.export.Scripting.createSpimRegistrationSequence(String, String, String, String, int)
bdv.ij.export.Scripting.createSpimRegistrationSequence(String, String, String, String, String, int, boolean, double)
sc.fiji.snt.analysis.graph.GraphUtils.createTree(Graph<SWCPoint, ?>)
isosurface.MeshExporter.createWaveFront(Collection, String)
ij3d.ContentInstant.deletePointListPoint(int)
ij3d.Content.deletePointListPoint(int)
sc.fiji.snt.SNTService.demoTree()
sc.fiji.snt.SNTService.demoTreeImage()
bdv.BigDataViewerActions.dialog(Actions, BrightnessDialog)
bdv.BigDataViewerActions.dialog(Actions, VisibilityAndGroupingDialog)
bdv.BigDataViewerActions.dialog(BrightnessDialog)
bdv.BigDataViewerActions.dialog(VisibilityAndGroupingDialog)
trainableSegmentation.WekaSegmentation.doHomogenizeClasses() use doClassBalance
spim.vecmath.Matrix4d.epsilonEquals(Matrix4d, float) Use epsilonEquals(Matrix4d,double) instead
ini.trakem2.persistence.Loader.fetchImageMask(Patch)
ini.trakem2.display.Tree.generateTriangles(double, int, int)
sc.fiji.snt.SNT.get3DUniverse()
sc.fiji.snt.plugin.ij1.Sholl_Analysis.getCircumferencePoints(int, int, int)
bdv.viewer.VisibilityAndGrouping.getCurrentGroup()
bdv.viewer.VisibilityAndGrouping.getCurrentSource()
bdv.viewer.VisibilityAndGrouping.getDisplayMode()
stitching.model.Model.getError() The term Error may be missleading---use `Model.getCost()` instead
bdv.ij.export.Scripting.getFusionTransforms(SpimRegistrationSequence, int, int, int, int)
sc.fiji.snt.SNT.getPaths3DDisplay()
sc.fiji.i5d.gui.ScrollbarWithLabel.getScrollbar() Returns a reference to the Scrollbar. Ideally the scrollbar should be fully handled by this class and hidden to other classes, but as it was once exposed this method is kept for backward compatibility. SyncWindows up to version 1.6 needs this method. The Image5DWindow also needs it to mimick the SliceSelector of StackWindow.
bdv.BigDataViewer.getSetupAssignments() Instead `getViewer().state()` returns the `ViewerState` that can be modified directly.
bdv.util.BdvHandle.getSetupAssignments()
sc.fiji.snt.analysis.graph.GraphUtils.getSimplifiedGraph(DirectedWeightedGraph)
bdv.viewer.VisibilityAndGrouping.getSourceGroups()
bdv.viewer.VisibilityAndGrouping.getSources()
bdv.tools.boundingbox.BoundingBoxUtil.getSourcesBoundingBox(ViewerState)
bdv.tools.boundingbox.BoundingBoxUtil.getSourcesBoundingBox(ViewerState, int, int)
bdv.tools.boundingbox.BoundingBoxUtil.getSourcesBoundingBoxReal(ViewerState)
bdv.tools.boundingbox.BoundingBoxUtil.getSourcesBoundingBoxReal(ViewerState, int, int)
bdv.viewer.VisibilityAndGrouping.getState()
bdv.viewer.ViewerPanel.getState() Use `ViewerPanel.state()` instead. Get a copy of the current `ViewerState`.
bigwarp.BigWarp.getTransform()
bdv.util.BdvFunctions.getUnusedSetupId(BigDataViewer) Ok to use for now, but shouldn't be required in the future.
bdv.util.BdvFunctions.getUnusedSetupId(SetupAssignments) Ok to use for now, but shouldn't be required in the future.
bdv.viewer.ViewerPanel.getVisibilityAndGrouping() Modify `ViewerPanel.state()` directly Returns the `VisibilityAndGrouping` that can be used to modify visibility and currentness of sources and groups, as well as grouping of sources, and display mode.
ini.trakem2.display.LayerSet.getZDisplayables(Class<?>, Layer, Area, boolean)
ini.trakem2.display.LayerSet.getZDisplayables(Class<?>, Layer, Area, boolean, boolean)
trainableSegmentation.WekaSegmentation.homogenizeTrainingData() use balanceTrainingData
trainableSegmentation.WekaSegmentation.homogenizeTrainingData(Instances) use balanceTrainingData
bdv.tools.InitializeViewerState.initBrightness(double, double, ViewerPanel, SetupAssignments)
bigwarp.BigWarp.initBrightness(double, double, ViewerState, ConverterSetups) Use `InitializeViewerState` method instead.
bdv.tools.InitializeViewerState.initBrightness(double, double, ViewerState, SetupAssignments)
bdv.tools.InitializeViewerState.initBrightness(double, double, ViewerState, SetupAssignments)
bdv.tools.InitializeViewerState.initTransform(int, int, boolean, ViewerState)
bdv.viewer.NavigationActions.installActionBindings(InputActionBindings, ViewerPanel, KeyStrokeAdder.Factory)
bdv.viewer.NavigationActions.installAlignPlaneAction(Actions, ViewerPanel, ViewerPanel.AlignPlane, String...)
spim.vecmath.Tuple3d.interpolate(Tuple3d, float) Use interpolate(Tuple3d,double) instead
spim.vecmath.Tuple3d.interpolate(Tuple3d, Tuple3d, float) Use interpolate(Tuple3d,Tuple3d,double) instead
spim.vecmath.Tuple4d.interpolate(Tuple4d, float) Use interpolate(Tuple4d,double) instead
spim.vecmath.Tuple4d.interpolate(Tuple4d, Tuple4d, float) Use interpolate(Tuple4d,Tuple4d,double) instead
bdv.viewer.VisibilityAndGrouping.isFusedEnabled()
bdv.viewer.VisibilityAndGrouping.isGroupActive(int)
bdv.viewer.VisibilityAndGrouping.isGroupingEnabled()
bdv.viewer.state.ViewerState.isSingleSourceMode() replaced by `ViewerState.getDisplayMode()`
bdv.viewer.VisibilityAndGrouping.isSourceActive(int)
bdv.viewer.VisibilityAndGrouping.isSourceVisible(int)
sc.fiji.snt.SNTPrefs.loadStartupPrefs()
ini.trakem2.display.Patch.makeFlatGrayImage(List<Patch>, Rectangle, int, double)
sc.fiji.snt.plugin.ij1.Sholl_Utils.makePlotLabel(Plot, String, Color)
sc.fiji.snt.plugin.ij1.Sholl_Utils.markPlotPoint(Plot, double[], Color)
sc.fiji.snt.gui.EnhancedGenericDialog.menuItemTriggeringResources()
bdv.viewer.NavigationActions.modes(ViewerPanel)
bigwarp.loader.ImagePlusLoader.numChannels()
bdv.viewer.VisibilityAndGrouping.numGroups()
bdv.viewer.VisibilityAndGrouping.numSources()
mpicbg.models.SpringMesh.optimizeMeshes2(Collection<SpringMesh>, double, int, int) Remains for reproducing legacy results
mpicbg.models.SpringMesh.optimizeMeshes2(Collection<SpringMesh>, double, int, int, boolean) Remains for reproducing legacy results
ini.trakem2.display.DisplayCanvas.paintOffscreen(Layer, int, int, Rectangle, double, Displayable, int, Rectangle, Loader, HashMap<Color, Layer>, ArrayList<LayerPanel>, int, GraphicsSource, boolean, ArrayList<Displayable>)
ini.trakem2.persistence.Loader.releaseMemory2()
bdv.viewer.ViewerPanel.removeAllSources() Modify `ViewerPanel.state()` directly
ini.trakem2.persistence.Loader.removeAlphaMask(Patch)
bdv.viewer.ViewerPanel.removeGroup(SourceGroup) Modify `ViewerPanel.state()` directly
ij3d.Image3DUniverse.removeOctree() The octree methods will be outsourced into a different plugin.
bdv.viewer.InteractiveDisplayCanvas.removeOverlayRenderer(OverlayRenderer) Use `overlays().remove(renderer)` instead
bdv.viewer.ViewerPanel.removeSource(Source<?>) Modify `ViewerPanel.state()` directly
bdv.viewer.VisibilityAndGrouping.removeSourceFromGroup(int, int)
bdv.viewer.ViewerPanel.removeSources(Collection<Source<?>>) Modify `ViewerPanel.state()` directly
bdv.viewer.VisibilityAndGrouping.removeUpdateListener(VisibilityAndGrouping.UpdateListener)
bdv.util.PlaceHolderOverlayInfo.removeVisibilityChangeListener(PlaceHolderOverlayInfo.VisibilityChangeListener) Use `visibilityChangeListeners().remove(listener)` instead.
mpicbg.ij.clahe.Flat.run(ImagePlus, int, int, float, ByteProcessor) Use the instance method `Flat.getInstance()`.`Flat.run(ImagePlus, int, int, float, ByteProcessor, boolean)` instead.
mpicbg.ij.clahe.FastFlat.run(ImagePlus, int, int, float, ByteProcessor) Use the instance method `Flat.getInstance()`.`Flat.run(ImagePlus, int, int, float, ByteProcessor, boolean)` instead.
sc.fiji.snt.plugin.ij1.Sholl_Utils.sampleImage() Use `ShollUtils.sampleImage()` instead
isosurface.MeshExporter.saveAsDXF(Collection)
isosurface.MeshExporter.saveAsSTL(Collection, int)
isosurface.MeshExporter.saveAsWaveFront(Collection)
bigwarp.BigWarp.saveMovingImageToFile()
sc.fiji.snt.SNTPrefs.saveStartupPrefs()
spim.vecmath.Tuple4d.scaleAdd(float, Tuple4d) Use scaleAdd(double,Tuple4d) instead
mpicbg.models.InterpolatedAffineModel2D.set(AffineTransform)
mpicbg.models.InterpolatedAffineModel2D.set(double, double, double, double, double, double)
mpicbg.models.RigidModel3D.set(double, double, double, double, double, double, double, double, double, double, double, double)
mpicbg.models.InterpolatedAffineModel1D.set(float, float)
sc.fiji.snt.SNT.setColorImage(ImagePlus)
ini.trakem2.display.Display.setCoordinateTransform(List<Patch>, CoordinateTransform, boolean) Use `Display.setCoordinateTransform(List, CoordinateTransform, int)` instead which implements pre-appending as a third mode.
sc.fiji.snt.hyperpanes.MultiDThreePanesCanvas.setCrosshairs(double, double, double, boolean)
bdv.viewer.VisibilityAndGrouping.setCurrentGroup(int)
bdv.viewer.VisibilityAndGrouping.setCurrentGroupOrSource(int)
bdv.viewer.VisibilityAndGrouping.setCurrentSource(int)
bdv.viewer.VisibilityAndGrouping.setCurrentSource(Source<?>)
bdv.viewer.ViewerPanel.setCurrentViewerTransform(AffineTransform3D) Modify `ViewerPanel.state()` directly (`state().setViewerTransform(t)`)
bdv.viewer.VisibilityAndGrouping.setDisplayMode(DisplayMode)
trainableSegmentation.WekaSegmentation.setDoHomogenizeClasses(boolean) use setDoClassBalance
stitching.model.Model.setError(double) The term Error may be missleading---use `Model.getCost()` instead
bdv.viewer.VisibilityAndGrouping.setFusedEnabled(boolean)
bdv.viewer.VisibilityAndGrouping.setGroupActive(int, boolean)
bdv.viewer.VisibilityAndGrouping.setGroupingEnabled(boolean)
bdv.viewer.VisibilityAndGrouping.setGroupName(int, String)
trainableSegmentation.WekaSegmentation.setHomogenizeClasses(boolean) use setClassBalance
ij3d.DefaultUniverse.setInteractiveBehavior(InteractiveBehavior) This method should not be used any more from outside this class. Use addInteractiveBehavior() instead.
ij3d.ContentInstant.setListPointPos(int, Point3d)
ij3d.Content.setListPointPos(int, Point3d)
ij3d.Image3DUniverse.setMenubar(MenuBar) Use swing instead.
spim.vecmath.Transform3D.setNonUniformScale(double, double, double) Use setScale(Vector3d) instead of setNonUniformScale; note that the setScale only modifies the scale component
sc.fiji.snt.plugin.ij1.ShollOptions.setNoPlots(boolean)
sc.fiji.snt.plugin.ij1.ShollOptions.setNoTable(boolean)
sc.fiji.snt.SNT.setPaths3DDisplay(int)
bdv.viewer.state.ViewerState.setSingleSourceMode(boolean) replaced by `ViewerState.setDisplayMode(DisplayMode)`
bdv.viewer.VisibilityAndGrouping.setSourceActive(int, boolean)
bdv.viewer.VisibilityAndGrouping.setSourceActive(Source<?>, boolean)
bdv.tools.brightness.ConverterSetup.setViewer(RequestRepaint)
bdv.viewer.overlay.SourceInfoOverlayRenderer.setViewerState(ViewerState)
bdv.viewer.overlay.ScaleBarOverlayRenderer.setViewerState(ViewerState)
bdv.viewer.overlay.MultiBoxOverlayRenderer.setViewerState(ViewerState)
sc.fiji.snt.SNT.showCorrespondencesTo(File, Color, double)
sc.fiji.snt.viewer.Viewer2D.showPlot() Use `Viewer2D.show()` instead.
bdv.viewer.NavigationActions.sources(ViewerPanel)
bdv.ij.export.Scripting.split(SetupAggregator, int, int, String)
sc.fiji.snt.SNT.startHessian(String, double, double, boolean)
ini.trakem2.persistence.Loader.storeAlphaMask(Patch, ByteProcessor)
bdv.viewer.NavigationActions.time(ViewerPanel)
bdv.viewer.VisibilityAndGrouping.toggleActiveGroupOrSource(int)
bigwarp.BigWarp.BigWarpData.transferChannelSettings(SetupAssignments, VisibilityAndGrouping)
ini.trakem2.display.ZDisplayable.transformPoints(Layer, double, double, double, double, double)
sc.fiji.snt.PathAndFillManager.universeClosed()
mpicbg.models.Vertex.update(double) Remains for legacy compatibility
bdv.viewer.VisibilityAndGrouping.update(int)
trainableSegmentation.FeatureStack.updateFeatures()
sc.fiji.snt.SNT.updateImageContent(int)
ij3d.Image3DUniverse.updateOctree() The octree methods will be outsourced into a different plugin.
ini.trakem2.display.Display.updatePanelIndex(Layer, Displayable)
bigwarp.loader.ImagePlusLoader.ColorSettings.updateSetup(SetupAssignments)
sc.fiji.snt.plugin.ij1.Sholl_Utils.version() Use `SNTUtils.VERSION` instead
isosurface.MeshExporter.writeTrianglesDXF(StringBuffer, List, String, String)

Deprecated Constructors
Constructor and Description
sc.fiji.snt.analysis.sholl.parsers.ImageParser(ImagePlus)
sc.fiji.snt.analysis.sholl.parsers.ImageParser3D(ImagePlus)
plugin.Lasso(ImagePlus, int) Use @link #Lasso(ImagePlus,Mode) instead.
bdv.viewer.NavigationActions(KeyStrokeAdder.Factory)
bdv.viewer.VisibilityAndGrouping(ViewerState)

Deprecated API

Contents