ShollOverlay (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- sc.fiji.snt.analysis.sholl.gui.ShollOverlay

All Implemented Interfaces:: ProfileProperties

public class ShollOverlay
extends Object
implements ProfileProperties

Author:: Tiago Ferreira

Field Summary

Fields
Modifier and Type Field and Description

static String COUNT

static String POINTS

static String PROP

static String RADIUS

static String SHELL
- Fields inherited from interface sc.fiji.snt.analysis.sholl.ProfileProperties
  HEMI_EAST, HEMI_NONE, HEMI_NORTH, HEMI_SOUTH, HEMI_WEST, INTG_MEAN, INTG_MEDIAN, INTG_MODE, KEY_2D3D, KEY_CALIBRATION, KEY_CENTER, KEY_CHANNEL_POS, KEY_FRAME_POS, KEY_HEMISHELLS, KEY_ID, KEY_NSAMPLES, KEY_NSAMPLES_INTG, KEY_SLICE_POS, KEY_SOURCE, KEY_THRESHOLD_RANGE, SRC_IMG, SRC_TABLE, SRC_TRACES, UNSET

Fields
Modifier and Type	Field and Description
`static String`	`COUNT`
`static String`	`POINTS`
`static String`	`PROP`
`static String`	`RADIUS`
`static String`	`SHELL`

Constructor Summary

Constructors
Constructor and Description
`ShollOverlay(Profile profile)`
`ShollOverlay(Profile profile, ij.ImagePlus imp)`
`ShollOverlay(Profile profile, ij.ImagePlus imp, boolean clearExistingROIs)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`addCenter()`
`void`	`assignProperty(String property)`
`Set<String>`	`getLUTs()`
`Overlay`	`getOverlay()`
`static void`	`remove(Overlay overlay, String property)`
`void`	`removePoints()`
`void`	`removeShells()`
`static void`	`removeShells(Overlay overlay)`
`static void`	`removeShollROIs(Overlay overlay)`
`void`	`setAlternateShells()`
`void`	`setAlternateShells(Color color1, Color color2)`
`void`	`setBaseColor(Color baseColor)`
`void`	`setGradientShells(Color color1, Color color2)`
`void`	`setPointsColor(Color color)`
`void`	`setPointsLUT(ColorTable colorTable, String property)`
`void`	`setPointsLUT(String lutName)`
`void`	`setPointsLUT(String lutName, String property)`
`void`	`setPointsOpacity(double percent)`
`void`	`setShellsColor(Color color)`
`void`	`setShellsLUT(ColorTable colorTable, String property)`
`void`	`setShellsLUT(String lutName)`
`void`	`setShellsLUT(String lutName, String property)`
`void`	`setShellsOpacity(double percent)`
`void`	`setShellsThickness(int strokeWidth)`
`void`	`updateDisplay()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- COUNT
```
public static final String COUNT
```
  See Also:
  
  Constant Field Values
- RADIUS
```
public static final String RADIUS
```
  See Also:
  
  Constant Field Values
- PROP
```
public static final String PROP
```
  See Also:
  
  Constant Field Values
- SHELL
```
public static final String SHELL
```
  See Also:
  
  Constant Field Values
- POINTS
```
public static final String POINTS
```
  See Also:
  
  Constant Field Values

Constructor Detail

ShollOverlay
```
public ShollOverlay(Profile profile)
```

ShollOverlay

public ShollOverlay(Profile profile,
                    ij.ImagePlus imp)

ShollOverlay

public ShollOverlay(Profile profile,
                    ij.ImagePlus imp,
                    boolean clearExistingROIs)

Method Detail

updateDisplay
```
public void updateDisplay()
```

assignProperty

public void assignProperty(String property)

removeShells

public static void removeShells(Overlay overlay)

removeShollROIs

public static void removeShollROIs(Overlay overlay)

remove

public static void remove(Overlay overlay,
                          String property)

getOverlay
```
public Overlay getOverlay()
```

removeShells
```
public void removeShells()
```

removePoints
```
public void removePoints()
```

setBaseColor

public void setBaseColor(Color baseColor)

addCenter
```
public void addCenter()
```

setShellsColor

public void setShellsColor(Color color)

setPointsColor

public void setPointsColor(Color color)

getLUTs
```
public Set<String> getLUTs()
```

setShellsLUT

public void setShellsLUT(String lutName)

setShellsLUT

public void setShellsLUT(String lutName,
                         String property)
                  throws IOException

Throws:: IOException

setPointsLUT

public void setPointsLUT(String lutName,
                         String property)
                  throws IOException

Throws:: IOException

setPointsLUT

public void setPointsLUT(String lutName)

setPointsLUT

public void setPointsLUT(ColorTable colorTable,
                         String property)

setShellsLUT

public void setShellsLUT(ColorTable colorTable,
                         String property)

setShellsThickness

public void setShellsThickness(int strokeWidth)

setShellsOpacity

public void setShellsOpacity(double percent)

setPointsOpacity

public void setPointsOpacity(double percent)

setGradientShells

public void setGradientShells(Color color1,
                              Color color2)

setAlternateShells

public void setAlternateShells(Color color1,
                               Color color2)

setAlternateShells
```
public void setAlternateShells()
```

Class ShollOverlay

Field Summary

Fields inherited from interface sc.fiji.snt.analysis.sholl.ProfileProperties

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

COUNT

RADIUS

PROP

SHELL

POINTS

Constructor Detail

ShollOverlay

ShollOverlay

ShollOverlay

Method Detail

updateDisplay

assignProperty

removeShells

removeShollROIs

remove

getOverlay

removeShells

removePoints

setBaseColor

addCenter

setShellsColor

setPointsColor

getLUTs

setShellsLUT

setShellsLUT

setPointsLUT

setPointsLUT

setPointsLUT

setShellsLUT

setShellsThickness

setShellsOpacity

setPointsOpacity

setGradientShells

setAlternateShells

setAlternateShells