ImgLibVolume (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- ij3d.Volume
- - ini.trakem2.utils.ImgLibVolume<T>

```
public class ImgLibVolume<T extends RealType<T>>
extends Volume
```
This class encapsulates an mpicbg.imglib.Image object, for use in Marching Cubes.

Author:

Albert Cardona

Nested Class Summary
- Nested classes/interfaces inherited from class ij3d.Volume
  Volume.AverageByteLoader, Volume.ByteImage, Volume.ByteLoader, Volume.InputImage, Volume.IntImage, Volume.IntLoader, Volume.Loader, Volume.SaturatedIntLoader

Field Summary

Fields
Modifier and Type Field and Description

protected int dataType
- Fields inherited from class ij3d.Volume
  average, BYTE_DATA, channels, image, imp, INT_DATA, loader, maxCoord, minCoord, pd, ph, pw, saturatedVolumeRendering, xDim, yDim, zDim

Fields
Modifier and Type	Field and Description
`protected int`	`dataType`

Constructor Summary

Constructors
Constructor and Description

ImgLibVolume(Image<T> img, float[] origin)

Constructors
Constructor and Description
`ImgLibVolume(Image<T> img, float[] origin)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`int`	`getDataType()` Get the current set data type.
`Image<T>`	`getImage()`
`protected void`	`initLoader()` Create the image cursor anew.
`int`	`load(int x, int y, int z)` Load the value at the specified position
`void`	`set(int x, int y, int z, int v)`
`boolean`	`setAverage(boolean a)` Does nothing.
`void`	`setNoCheck(int x, int y, int z, int v)`

Methods inherited from class ij3d.Volume
clear, getAlphaLUT, getAverage, getBlueLUT, getGreenLUT, getImagePlus, getRedLUT, initDataType, isAverage, isDefaultLUT, isSaturatedVolumeRendering, loadWithLUT, restore, setAlphaLUTFullyOpaque, setChannels, setImage, setLUTs, setSaturatedVolumeRendering, swap

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - dataType
```
protected int dataType
```
- Constructor Detail
  - ImgLibVolume
```
public ImgLibVolume(Image<T> img,
                    float[] origin)
             throws Exception
```
    Throws:
    
    Exception
- Method Detail
  - getImage
```
public Image<T> getImage()
```
  - initLoader
```
protected void initLoader()
```
    Create the image cursor anew.
    
    Overrides:
    
    initLoader in class Volume
  - setAverage
```
public boolean setAverage(boolean a)
```
    Does nothing.
    
    Overrides:
    
    setAverage in class Volume
    
    Returns:
    
    true if the value for 'average' has changed.
  - setNoCheck
```
public void setNoCheck(int x,
                       int y,
                       int z,
                       int v)
```
    Overrides:
    
    setNoCheck in class Volume
  - set
```
public void set(int x,
                int y,
                int z,
                int v)
```
    Overrides:
    
    set in class Volume
  - load
```
public int load(int x,
                int y,
                int z)
```
    Load the value at the specified position
    
    Overrides:
    
    load in class Volume
    
    Parameters:
    
    x -
    
    y -
    
    z -
    
    Returns:
    
    value. Casted to int if it was a byte value before.
  - getDataType
```
public int getDataType()
```
    Description copied from class: Volume
    
    Get the current set data type. This is one of BYTE_DATA or INT_DATA. The data type specifies in which format the data is read.
    
    Overrides:
    
    getDataType in class Volume

Class ImgLibVolume<T extends RealType<T>>

Nested Class Summary

Nested classes/interfaces inherited from class ij3d.Volume

Field Summary

Fields inherited from class ij3d.Volume

Constructor Summary

Method Summary

Methods inherited from class ij3d.Volume

Methods inherited from class java.lang.Object

Field Detail

dataType

Constructor Detail

ImgLibVolume

Method Detail

getImage

initLoader

setAverage

setNoCheck

set

load

getDataType