Field Detail

• always_interpolate_areas_with_distance_map

  public static final String always_interpolate_areas_with_distance_map

  Project property key.

  See Also:

  Constant Field Values

Method Detail

• generateTriangles

  public static List<Point3f> generateTriangles(Displayable d,
                                                double scale,
                                                int resample_,
                                                Map<Layer,Area> areas)

  Expects areas in local coordinates to the Displayable @param d.

  Parameters:

  d -

  scale - The scaling of the entire universe, to limit the overall box

  resample_ - The optimization parameter for marching cubes (i.e. a value of 2 will scale down to half, then apply marching cubes, then scale up by 2 the vertices coordinates).

  areas -

  Returns:

  The List of triangles involved, specified as three consecutive vertices. A list of Point3f vertices.

• extractAreas

  public static final Map<Float,Area> extractAreas(ij.process.ImageProcessor ip)

  Extracts all non-background areas.

• extractAreas

  public static final Map<Float,Area> extractAreas(ij.process.ImageProcessor ip,
                                                   HashMap<Float,Area> map_,
                                                   boolean add_background,
                                                   Rectangle box_,
                                                   Thread parent,
                                                   boolean report)

  Scan line-wise for all areas, returning a Map of area pixel values in @param ip vs. Area instances. If @param map_ is not null, it puts the areas there and returns it. If @param box_ is not null, it uses it as the unit pixel area. To make any sense, it must be setup as Rectangle(0,0,1,1). If @param report is true, it will report progress every 100 lines.

• infiniteArea

  public static Area infiniteArea()

• singularInterpolation

  public static final Area[] singularInterpolation(Area a1,
                                                   Area a2,
                                                   int nInterpolates)
                                            throws Exception

  Interpolate areas only if they are made of a single shape each. Assumes that areas are in the same coordinate system.

  Throws:

  Exception

• manyToManyInterpolation

  public static final Area[] manyToManyInterpolation(Area a1,
                                                     Area a2,
                                                     int nInterpolates)
                                              throws InterruptedException,
                                                     ExecutionException

  Throws:

  InterruptedException

  ExecutionException