Field Detail

• defaultImg1

  public static int defaultImg1

• defaultImg2

  public static int defaultImg2

• defaultChannel1

  public static int defaultChannel1

• defaultChannel2

  public static int defaultChannel2

• defaultTimeSelect

  public static int defaultTimeSelect

• defaultFuseImages

  public static boolean defaultFuseImages

• defaultFusionMethod

  public static int defaultFusionMethod

• defaultIgnoreZeroValues

  public static boolean defaultIgnoreZeroValues

• defaultComputeOverlap

  public static boolean defaultComputeOverlap

• defaultSubpixelAccuracy

  public static boolean defaultSubpixelAccuracy

• defaultCheckPeaks

  public static int defaultCheckPeaks

• defaultxOffset

  public static double defaultxOffset

• defaultyOffset

  public static double defaultyOffset

• defaultzOffset

  public static double defaultzOffset

• defaultHandleChannel1

  public static boolean[] defaultHandleChannel1

• defaultHandleChannel2

  public static boolean[] defaultHandleChannel2

• defaultMemorySpeedChoice

  public static int defaultMemorySpeedChoice

• defaultDisplacementThresholdRelative

  public static double defaultDisplacementThresholdRelative

• defaultDisplacementThresholdAbsolute

  public static double defaultDisplacementThresholdAbsolute

Constructor Detail

• Stitching_Pairwise

  public Stitching_Pairwise()

Method Detail

• run

  public void run(String arg0)

  Specified by:

  run in interface ij.plugin.PlugIn

• performPairWiseStitching

  public static void performPairWiseStitching(ij.ImagePlus imp1,
                                              ij.ImagePlus imp2,
                                              StitchingParameters params)

• fuse

  protected static <T extends RealType<T> & NativeType<T>> ij.ImagePlus fuse(T targetType,
                                                                             ij.ImagePlus imp1,
                                                                             ij.ImagePlus imp2,
                                                                             ArrayList<InvertibleBoundable> models,
                                                                             StitchingParameters params)

• getComparePairs

  protected static Vector<ComparePair> getComparePairs(ij.ImagePlus imp1,
                                                       ij.ImagePlus imp2,
                                                       int dimensionality,
                                                       int timeSelect)

• testRegistrationCompatibility

  public static String testRegistrationCompatibility(ij.ImagePlus imp1,
                                                     ij.ImagePlus imp2)