RenamableSource (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- bdv.img.RenamableSource<T>

All Implemented Interfaces:: Source<T>

public class RenamableSource<T>
extends Object
implements Source<T>

Constructor Summary

Constructors
Constructor and Description

RenamableSource(Source<T> src)

RenamableSource(Source<T> src, String name)

Constructors
Constructor and Description
`RenamableSource(Source<T> src)`
`RenamableSource(Source<T> src, String name)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`RealRandomAccessible<T>`	`getInterpolatedSource(int t, int level, Interpolation method)` Get the 3D stack at timepoint index t, extended to infinity and interpolated.
`String`	`getName()` Get the name of the source.
`int`	`getNumMipmapLevels()`
`RandomAccessibleInterval<T>`	`getSource(int t, int level)` Get the 3D stack at timepoint index t.
`void`	`getSourceTransform(int t, int level, AffineTransform3D transform)` Get the transform from the `source` at the given timepoint index and mipmap level into the global coordinate system.
`T`	`getType()` Get an instance of the pixel type.
`VoxelDimensions`	`getVoxelDimensions()` Get voxel size and unit for this source.
`Source<T>`	`getWrappedSource()`
`boolean`	`isPresent(int t)` Is there a stack at timepoint index t?
`void`	`setName(String name)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface bdv.viewer.Source
doBoundingBoxCulling

- Constructor Detail
  - RenamableSource
```
public RenamableSource(Source<T> src)
```
  - RenamableSource
```
public RenamableSource(Source<T> src,
                       String name)
```
- Method Detail
  - isPresent
```
public boolean isPresent(int t)
```
    Description copied from interface: Source
    
    Is there a stack at timepoint index t?
    
    Specified by:
    
    isPresent in interface Source<T>
    
    Parameters:
    
    t - timepoint index
    
    Returns:
    
    true, if there is data for timepoint index t.
  - getWrappedSource
```
public Source<T> getWrappedSource()
```
  - getSource
```
public RandomAccessibleInterval<T> getSource(int t,
                                             int level)
```
    Description copied from interface: Source
    
    Get the 3D stack at timepoint index t.
    
    Specified by:
    
    getSource in interface Source<T>
    
    Parameters:
    
    t - timepoint index
    
    level - mipmap level
    
    Returns:
    
    the stack.
  - getInterpolatedSource
```
public RealRandomAccessible<T> getInterpolatedSource(int t,
                                                     int level,
                                                     Interpolation method)
```
    Description copied from interface: Source
    
    Get the 3D stack at timepoint index t, extended to infinity and interpolated.
    
    Specified by:
    
    getInterpolatedSource in interface Source<T>
    
    Parameters:
    
    t - timepoint index
    
    level - mipmap level
    
    method - interpolation method to use
    
    Returns:
    
    the extended and interpolated stack.
  - getSourceTransform
```
public void getSourceTransform(int t,
                               int level,
                               AffineTransform3D transform)
```
    Description copied from interface: Source
    
    Get the transform from the source at the given timepoint index and mipmap level into the global coordinate system.
    
    Specified by:
    
    getSourceTransform in interface Source<T>
    
    Parameters:
    
    t - timepoint index
    
    level - mipmap level
    
    transform - is set to the source-to-global transform, that transforms source coordinates into the global coordinates
  - getType
```
public T getType()
```
    Description copied from interface: Source
    
    Get an instance of the pixel type.
    
    Specified by:
    
    getType in interface Source<T>
    
    Returns:
    
    instance of pixel type.
  - setName
```
public void setName(String name)
```
  - getName
```
public String getName()
```
    Description copied from interface: Source
    
    Get the name of the source.
    
    Specified by:
    
    getName in interface Source<T>
    
    Returns:
    
    the name of the source.
  - getVoxelDimensions
```
public VoxelDimensions getVoxelDimensions()
```
    Description copied from interface: Source
    
    Get voxel size and unit for this source. May return null.
    
    Specified by:
    
    getVoxelDimensions in interface Source<T>
    
    Returns:
    
    voxel size and unit or null.
  - getNumMipmapLevels
```
public int getNumMipmapLevels()
```
    Specified by:
    
    getNumMipmapLevels in interface Source<T>

Class RenamableSource<T>

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Methods inherited from interface bdv.viewer.Source

Constructor Detail

RenamableSource

RenamableSource

Method Detail

isPresent

getWrappedSource

getSource

getInterpolatedSource

getSourceTransform

getType

setName

getName

getVoxelDimensions

getNumMipmapLevels