LiICQ (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- sc.fiji.coloc.algorithms.Algorithm<T>
- - sc.fiji.coloc.algorithms.LiICQ<T>

Type Parameters:

T -
```
public class LiICQ<T extends RealType<T>>
extends Algorithm<T>
```
This algorithm calculates Li et al.'s ICQ (intensity correlation quotient).

Field Summary
- Fields inherited from class sc.fiji.coloc.algorithms.Algorithm
  name

Constructor Summary

Constructors
Constructor and Description

LiICQ()

Constructors
Constructor and Description
`LiICQ()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`static <T extends RealType<T>> double`	`calculateLisICQ(TwinCursor<T> cursor, double mean1, double mean2)` Calculates Li et al.'s intensity correlation quotient (ICQ) for two images.
`void`	`execute(DataContainer<T> container)` Executes the previously initialized `Algorithm`.
`void`	`processResults(ResultHandler<T> handler)` A method to give the algorithm the opportunity to let its results being processed by the passed handler.

Methods inherited from class sc.fiji.coloc.algorithms.Algorithm
addWarning, getName, getWarnings

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - LiICQ
```
public LiICQ()
```
- Method Detail
  - execute
```
public void execute(DataContainer<T> container)
             throws MissingPreconditionException
```
    Description copied from class: Algorithm
    
    Executes the previously initialized Algorithm.
    
    Specified by:
    
    execute in class Algorithm<T extends RealType<T>>
    
    Throws:
    
    MissingPreconditionException
  - calculateLisICQ
```
public static <T extends RealType<T>> double calculateLisICQ(TwinCursor<T> cursor,
                                                             double mean1,
                                                             double mean2)
```
    Calculates Li et al.'s intensity correlation quotient (ICQ) for two images.
    
    Parameters:
    
    cursor - A TwinCursor that iterates over two images
    
    mean1 - The first images mean
    
    mean2 - The second images mean
    
    Returns:
    
    Li et al.'s ICQ value
  - processResults
```
public void processResults(ResultHandler<T> handler)
```
    Description copied from class: Algorithm
    
    A method to give the algorithm the opportunity to let its results being processed by the passed handler. By default this methods passes the collected warnings to the handler and sub-classes should make use of this by adding custom behavior and call the super class.
    
    Overrides:
    
    processResults in class Algorithm<T extends RealType<T>>
    
    Parameters:
    
    handler - The ResultHandler to process the results.

Class LiICQ<T extends RealType<T>>

Field Summary

Fields inherited from class sc.fiji.coloc.algorithms.Algorithm

Constructor Summary

Method Summary

Methods inherited from class sc.fiji.coloc.algorithms.Algorithm

Methods inherited from class java.lang.Object

Constructor Detail

LiICQ

Method Detail

execute

calculateLisICQ

processResults