LightSheetZ1 (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- spim.fiji.datasetmanager.LightSheetZ1

All Implemented Interfaces:: MultiViewDatasetDefinition

public class LightSheetZ1
extends Object
implements MultiViewDatasetDefinition

Field Summary

Fields
Modifier and Type	Field and Description
`static boolean`	`defaultApplyRotAxis`
`static String`	`defaultFirstFile`
`static boolean`	`defaultFixBioformats`
`static boolean`	`defaultModifyCal`
`static boolean`	`defaultRotAxis`
`static String[]`	`rotAxes`

Constructor Summary

Constructors
Constructor and Description

LightSheetZ1()

Constructors
Constructor and Description
`LightSheetZ1()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`SpimData2`	`createDataset()` This method is supposed to (interactively, ideally ImageJ-macroscriptable) query all necessary data from the user to build up a SpimData object and save it as an XML file.
`protected TimePoints`	`createTimePoints(LightSheetZ1MetaData meta)` Creates the `TimePoints` for the `SpimData` object
`protected ArrayList<ViewSetup>`	`createViewSetups(LightSheetZ1MetaData meta)` Creates the List of `ViewSetup` for the `SpimData` object.
`protected boolean`	`fixBioformats(SpimData2 spimData, File cziFile, LightSheetZ1MetaData meta)`
`String`	`getExtendedDescription()` An explanation for the user what exactly this `MultiViewDatasetDefinition` supports and how it needs to be stored.
`String`	`getTitle()` Defines the title under which it will be displayed in the list of available multi-view dataset definitions
`static void`	`main(String[] args)`
`LightSheetZ1`	`newInstance()`
`protected File`	`queryCZIFile()`
`protected ImgFactory<? extends NativeType<?>>`	`selectImgFactory(LightSheetZ1MetaData meta)`
`protected boolean`	`showDialogs(LightSheetZ1MetaData meta)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - rotAxes
```
public static String[] rotAxes
```
  - defaultFirstFile
```
public static String defaultFirstFile
```
  - defaultModifyCal
```
public static boolean defaultModifyCal
```
  - defaultRotAxis
```
public static boolean defaultRotAxis
```
  - defaultApplyRotAxis
```
public static boolean defaultApplyRotAxis
```
  - defaultFixBioformats
```
public static boolean defaultFixBioformats
```
- Constructor Detail
  - LightSheetZ1
```
public LightSheetZ1()
```
- Method Detail
  - getTitle
```
public String getTitle()
```
    Description copied from interface: MultiViewDatasetDefinition
    
    Defines the title under which it will be displayed in the list of available multi-view dataset definitions
    
    Specified by:
    
    getTitle in interface MultiViewDatasetDefinition
    
    Returns:
  - getExtendedDescription
```
public String getExtendedDescription()
```
    Description copied from interface: MultiViewDatasetDefinition
    
    An explanation for the user what exactly this MultiViewDatasetDefinition supports and how it needs to be stored. Up to 15 lines will be displayed with 80 characters each. No newline characters are allowed.
    
    Specified by:
    
    getExtendedDescription in interface MultiViewDatasetDefinition
    
    Returns:
    
    description
  - createDataset
```
public SpimData2 createDataset()
```
    Description copied from interface: MultiViewDatasetDefinition
    
    This method is supposed to (interactively, ideally ImageJ-macroscriptable) query all necessary data from the user to build up a SpimData object and save it as an XML file.
    
    Specified by:
    
    createDataset in interface MultiViewDatasetDefinition
    
    Returns:
    
    - the saved SpimData object
  - createViewSetups
```
protected ArrayList<ViewSetup> createViewSetups(LightSheetZ1MetaData meta)
```
    Creates the List of ViewSetup for the SpimData object. The ViewSetup are defined independent of the TimePoint, each TimePoint should have the same ViewSetups. The MissingViews class defines if some of them are missing for some of the TimePoints
    
    Returns:
  - createTimePoints
```
protected TimePoints createTimePoints(LightSheetZ1MetaData meta)
```
    Creates the TimePoints for the SpimData object
  - selectImgFactory
```
protected ImgFactory<? extends NativeType<?>> selectImgFactory(LightSheetZ1MetaData meta)
```
  - fixBioformats
```
protected boolean fixBioformats(SpimData2 spimData,
                                File cziFile,
                                LightSheetZ1MetaData meta)
```
  - showDialogs
```
protected boolean showDialogs(LightSheetZ1MetaData meta)
```
  - queryCZIFile
```
protected File queryCZIFile()
```
  - newInstance
```
public LightSheetZ1 newInstance()
```
    Specified by:
    
    newInstance in interface MultiViewDatasetDefinition
    
    Returns:
    
    - a new instance of this implementation
  - main
```
public static void main(String[] args)
```

Class LightSheetZ1

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

rotAxes

defaultFirstFile

defaultModifyCal

defaultRotAxis

defaultApplyRotAxis

defaultFixBioformats

Constructor Detail

LightSheetZ1

Method Detail

getTitle

getExtendedDescription

createDataset

createViewSetups

createTimePoints

selectImgFactory

fixBioformats

showDialogs

queryCZIFile

newInstance

main