TransformMeshMappingWithMasks (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.ij.InvertibleTransformMapping<T>
- - mpicbg.ij.TransformMeshMapping<T>
  - - mpicbg.trakem2.transform.TransformMeshMappingWithMasks<T>

All Implemented Interfaces:

InverseMapping<T>, InvertibleMapping<T>, Mapping<T>

Direct Known Subclasses:

TransformMeshMapping
```
public class TransformMeshMappingWithMasks<T extends TransformMesh>
extends TransformMeshMapping<T>
```
Specialized TransformMapping for Patches, that is, rendering the image, outside mask and mask in one go instead three.

Version:

0.1a

Author:

Stephan Saalfeld saalfeld@mpi-cbg.de

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class TransformMeshMappingWithMasks.ImageProcessorWithMasks

Nested Classes
Modifier and Type	Class and Description
`static class`	`TransformMeshMappingWithMasks.ImageProcessorWithMasks`

Field Summary
- Fields inherited from class mpicbg.ij.InvertibleTransformMapping
  transform

Constructor Summary

Constructors
Constructor and Description

TransformMeshMappingWithMasks(T t)

Constructors
Constructor and Description
`TransformMeshMappingWithMasks(T t)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`map(ij.process.ByteProcessor source, ij.process.ByteProcessor alpha, ij.process.ByteProcessor target, ij.process.ByteProcessor targetMask)` Render source into master using alpha composition.
`void`	`map(ij.process.ByteProcessor source, ij.process.ByteProcessor alpha, ij.process.ByteProcessor target, ij.process.ByteProcessor targetMask, int numThreads)` Render source into target using alpha composition.
`void`	`map(ij.process.ColorProcessor source, ij.process.ByteProcessor alpha, ij.process.ColorProcessor target, ij.process.ByteProcessor targetMask)` Render source into master using alpha composition.
`void`	`map(ij.process.ColorProcessor source, ij.process.ByteProcessor alpha, ij.process.ColorProcessor target, ij.process.ByteProcessor targetMask, int numThreads)` Render source into master using alpha composition.
`void`	`map(ij.process.ShortProcessor source, ij.process.ByteProcessor alpha, ij.process.ShortProcessor target)` Render source into master using alpha composition.
`void`	`map(ij.process.ShortProcessor source, ij.process.ByteProcessor alpha, ij.process.ShortProcessor target, int numThreads)` Render source into target using alpha composition.
`void`	`map(TransformMeshMappingWithMasks.ImageProcessorWithMasks source, TransformMeshMappingWithMasks.ImageProcessorWithMasks target)`
`void`	`map(TransformMeshMappingWithMasks.ImageProcessorWithMasks source, TransformMeshMappingWithMasks.ImageProcessorWithMasks target, int numThreads)`
`protected static void`	`mapByteAlphaTriangle(TransformMesh m, AffineModel2D ai, ij.process.ByteProcessor source, ij.process.ByteProcessor alpha, ij.process.ByteProcessor target, ij.process.ByteProcessor targetMask)`
`protected static void`	`mapColorAlphaTriangle(TransformMesh m, AffineModel2D ai, ij.process.ColorProcessor source, ij.process.ByteProcessor alpha, ij.process.ColorProcessor target, ij.process.ByteProcessor targetMask)` Mapping for color images with alpha composition.
`void`	`mapInterpolated(TransformMeshMappingWithMasks.ImageProcessorWithMasks source, TransformMeshMappingWithMasks.ImageProcessorWithMasks target)`
`void`	`mapInterpolated(TransformMeshMappingWithMasks.ImageProcessorWithMasks source, TransformMeshMappingWithMasks.ImageProcessorWithMasks target, int numThreads)`
`protected static void`	`mapShortAlphaTriangle(TransformMesh m, AffineModel2D ai, ij.process.ShortProcessor source, ij.process.ByteProcessor alpha, ij.process.ShortProcessor target)`
`protected static void`	`mapTriangle(TransformMesh m, AffineModel2D ai, ij.process.ImageProcessor source, ij.process.ImageProcessor target, ij.process.ByteProcessor targetOutside)`
`protected static void`	`mapTriangle(TransformMesh m, AffineModel2D ai, ij.process.ImageProcessor source, ij.process.ImageProcessor sourceMask, ij.process.ImageProcessor target, ij.process.ImageProcessor targetMask, ij.process.ByteProcessor targetOutside)`
`protected static void`	`mapTriangleInterpolated(TransformMesh m, AffineModel2D ai, ij.process.ImageProcessor source, ij.process.ImageProcessor target, ij.process.ByteProcessor targetOutside)`
`protected static void`	`mapTriangleInterpolated(TransformMesh m, AffineModel2D ai, ij.process.ImageProcessor source, ij.process.ImageProcessor sourceMask, ij.process.ImageProcessor target, ij.process.ImageProcessor targetMask, ij.process.ByteProcessor targetOutside)` Does not do alpha composition.

Methods inherited from class mpicbg.ij.TransformMeshMapping
calculateBoundingBox, calculateBoundingBoxInverse, isInTriangle, map, map, mapInterpolated, mapInterpolated, mapInverse, mapInverse, mapInverseInterpolated, mapInverseInterpolated, mapTriangle, mapTriangleInterpolated, mapTriangleInverse, mapTriangleInverseInterpolated

Methods inherited from class mpicbg.ij.InvertibleTransformMapping
getTransform

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- TransformMeshMappingWithMasks
```
public TransformMeshMappingWithMasks(T t)
```

Method Detail

mapTriangle

protected static final void mapTriangle(TransformMesh m,
                                        AffineModel2D ai,
                                        ij.process.ImageProcessor source,
                                        ij.process.ImageProcessor target,
                                        ij.process.ByteProcessor targetOutside)

mapTriangleInterpolated

protected static final void mapTriangleInterpolated(TransformMesh m,
                                                    AffineModel2D ai,
                                                    ij.process.ImageProcessor source,
                                                    ij.process.ImageProcessor target,
                                                    ij.process.ByteProcessor targetOutside)

mapTriangle

protected static final void mapTriangle(TransformMesh m,
                                        AffineModel2D ai,
                                        ij.process.ImageProcessor source,
                                        ij.process.ImageProcessor sourceMask,
                                        ij.process.ImageProcessor target,
                                        ij.process.ImageProcessor targetMask,
                                        ij.process.ByteProcessor targetOutside)

mapTriangleInterpolated

protected static final void mapTriangleInterpolated(TransformMesh m,
                                                    AffineModel2D ai,
                                                    ij.process.ImageProcessor source,
                                                    ij.process.ImageProcessor sourceMask,
                                                    ij.process.ImageProcessor target,
                                                    ij.process.ImageProcessor targetMask,
                                                    ij.process.ByteProcessor targetOutside)

Does not do alpha composition.

mapShortAlphaTriangle

protected static final void mapShortAlphaTriangle(TransformMesh m,
                                                  AffineModel2D ai,
                                                  ij.process.ShortProcessor source,
                                                  ij.process.ByteProcessor alpha,
                                                  ij.process.ShortProcessor target)

map

public final void map(TransformMeshMappingWithMasks.ImageProcessorWithMasks source,
                      TransformMeshMappingWithMasks.ImageProcessorWithMasks target,
                      int numThreads)

mapInterpolated

public final void mapInterpolated(TransformMeshMappingWithMasks.ImageProcessorWithMasks source,
                                  TransformMeshMappingWithMasks.ImageProcessorWithMasks target,
                                  int numThreads)

map

public final void map(TransformMeshMappingWithMasks.ImageProcessorWithMasks source,
                      TransformMeshMappingWithMasks.ImageProcessorWithMasks target)

mapInterpolated

public final void mapInterpolated(TransformMeshMappingWithMasks.ImageProcessorWithMasks source,
                                  TransformMeshMappingWithMasks.ImageProcessorWithMasks target)

map

public final void map(ij.process.ShortProcessor source,
                      ij.process.ByteProcessor alpha,
                      ij.process.ShortProcessor target,
                      int numThreads)

Render source into target using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha.

Parameters:: source -; alpha -; target -; numThreads -

map

public final void map(ij.process.ShortProcessor source,
                      ij.process.ByteProcessor alpha,
                      ij.process.ShortProcessor target)

Render source into master using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha.

Parameters:: source -; alpha -; target -

map

public final void map(ij.process.ColorProcessor source,
                      ij.process.ByteProcessor alpha,
                      ij.process.ColorProcessor target,
                      ij.process.ByteProcessor targetMask)

Render source into master using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha. Mapping for color images with alpha composition.

Parameters:: source -; alpha -; target -; targetMask -

map

public final void map(ij.process.ColorProcessor source,
                      ij.process.ByteProcessor alpha,
                      ij.process.ColorProcessor target,
                      ij.process.ByteProcessor targetMask,
                      int numThreads)

Render source into master using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha. Mapping for color images with alpha composition.

Parameters:: source -; alpha -; target -; targetMask -; numThreads -

mapColorAlphaTriangle

protected static final void mapColorAlphaTriangle(TransformMesh m,
                                                  AffineModel2D ai,
                                                  ij.process.ColorProcessor source,
                                                  ij.process.ByteProcessor alpha,
                                                  ij.process.ColorProcessor target,
                                                  ij.process.ByteProcessor targetMask)

Mapping for color images with alpha composition.

Parameters:: m -; ai -; source -; alpha -; target -; targetMask -

map

public final void map(ij.process.ByteProcessor source,
                      ij.process.ByteProcessor alpha,
                      ij.process.ByteProcessor target,
                      ij.process.ByteProcessor targetMask,
                      int numThreads)

Render source into target using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha.

Parameters:: source -; alpha -; target -; numThreads -

map

public final void map(ij.process.ByteProcessor source,
                      ij.process.ByteProcessor alpha,
                      ij.process.ByteProcessor target,
                      ij.process.ByteProcessor targetMask)

Render source into master using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha.

Parameters:: source -; alpha -; target -

mapByteAlphaTriangle

protected static final void mapByteAlphaTriangle(TransformMesh m,
                                                 AffineModel2D ai,
                                                 ij.process.ByteProcessor source,
                                                 ij.process.ByteProcessor alpha,
                                                 ij.process.ByteProcessor target,
                                                 ij.process.ByteProcessor targetMask)

Class TransformMeshMappingWithMasks<T extends TransformMesh>

Nested Class Summary

Field Summary

Fields inherited from class mpicbg.ij.InvertibleTransformMapping

Constructor Summary

Method Summary

Methods inherited from class mpicbg.ij.TransformMeshMapping

Methods inherited from class mpicbg.ij.InvertibleTransformMapping

Methods inherited from class java.lang.Object

Constructor Detail

TransformMeshMappingWithMasks

Method Detail

mapTriangle

mapTriangleInterpolated

mapTriangle

mapTriangleInterpolated

mapShortAlphaTriangle

map

mapInterpolated

map

mapInterpolated

map

map

map

map

mapColorAlphaTriangle

map

map

mapByteAlphaTriangle