Field Detail

• convertChoices

  public static final String[] convertChoices

• defaultConvertChoice

  public static int defaultConvertChoice

• defaultMin

  public static double defaultMin

• defaultMax

  public static double defaultMax

• lastExportPath

  public static String lastExportPath

Constructor Detail

• Generic_Resave_HDF5

  public Generic_Resave_HDF5()

Method Detail

• main

  public static void main(String[] args)

• run

  public void run(String arg)

  Specified by:

  run in interface ij.plugin.PlugIn

• getPerSetupExportMipmapInfo

  public static Map<Integer,ExportMipmapInfo> getPerSetupExportMipmapInfo(AbstractSpimData<?> spimData,
                                                                          Generic_Resave_HDF5.Parameters params)

• getPartitions

  public static ArrayList<Partition> getPartitions(AbstractSpimData<?> spimData,
                                                   Generic_Resave_HDF5.Parameters params)

• writeHDF5

  public static void writeHDF5(AbstractSpimData<?> spimData,
                               Generic_Resave_HDF5.Parameters params,
                               ProgressWriter progressWriter)

• writeXML

  public static <T extends AbstractSpimData<A>,A extends AbstractSequenceDescription<?,?,? super ImgLoader>> void writeXML(T spimData,
                                                                                                                           XmlIoAbstractSpimData<A,T> io,
                                                                                                                           Generic_Resave_HDF5.Parameters params,
                                                                                                                           ProgressWriter progressWriter)
                                                                                                                    throws SpimDataException

  Throws:

  SpimDataException

• getInputXML

  public static File getInputXML()

• getParameters

  public static Generic_Resave_HDF5.Parameters getParameters(ExportMipmapInfo autoMipmapSettings,
                                                             boolean askForXMLPath,
                                                             boolean is16bit)

• getParameters

  public static Generic_Resave_HDF5.Parameters getParameters(ExportMipmapInfo autoMipmapSettings,
                                                             boolean askForXMLPath,
                                                             String dialogTitle,
                                                             boolean is16bit)