SpotNeighborhood (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- fiji.plugin.trackmate.util.SpotNeighborhood<T>

All Implemented Interfaces:

Iterable<T>, Neighborhood<T>, Dimensions, EuclideanSpace, Interval, IterableInterval<T>, IterableRealInterval<T>, Localizable, RealInterval, RealLocalizable
```
public class SpotNeighborhood<T extends RealType<T>>
extends Object
implements Neighborhood<T>
```

Field Summary

Fields
Modifier and Type Field and Description

protected double[] calibration

protected long[] center

protected AbstractNeighborhood<T> neighborhood

Fields
Modifier and Type	Field and Description
`protected double[]`	`calibration`
`protected long[]`	`center`
`protected AbstractNeighborhood<T>`	`neighborhood`

Constructor Summary

Constructors
Constructor and Description

SpotNeighborhood(Spot spot, ImgPlus<T> img)

Constructors
Constructor and Description
`SpotNeighborhood(Spot spot, ImgPlus<T> img)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`SpotNeighborhoodCursor<T>`	`cursor()`
`long`	`dimension(int d)`
`void`	`dimensions(long[] dimensions)`
`T`	`firstElement()`
`double`	`getDoublePosition(int d)`
`float`	`getFloatPosition(int d)`
`int`	`getIntPosition(int d)`
`long`	`getLongPosition(int d)`
`Interval`	`getStructuringElementBoundingBox()`
`Object`	`iterationOrder()`
`SpotNeighborhoodCursor<T>`	`iterator()`
`void`	`localize(double[] position)`
`void`	`localize(float[] position)`
`void`	`localize(int[] position)`
`void`	`localize(long[] position)`
`SpotNeighborhoodCursor<T>`	`localizingCursor()`
`long`	`max(int d)`
`void`	`max(long[] max)`
`void`	`max(Positionable max)`
`long`	`min(int d)`
`void`	`min(long[] min)`
`void`	`min(Positionable min)`
`int`	`numDimensions()`
`void`	`realMax(double[] max)`
`double`	`realMax(int d)`
`void`	`realMax(RealPositionable max)`
`void`	`realMin(double[] min)`
`double`	`realMin(int d)`
`void`	`realMin(RealPositionable min)`
`long`	`size()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable
forEach, spliterator

Methods inherited from interface net.imglib2.Interval
maxAsLongArray, maxAsPoint, minAsLongArray, minAsPoint

Methods inherited from interface net.imglib2.RealInterval
maxAsDoubleArray, maxAsRealPoint, minAsDoubleArray, minAsRealPoint

Methods inherited from interface net.imglib2.Dimensions
allPositive, allPositive, dimensions, dimensionsAsLongArray, dimensionsAsPoint, verify, verify, verifyAllPositive, verifyAllPositive

Methods inherited from interface net.imglib2.Localizable
localize, positionAsLongArray, positionAsPoint

Methods inherited from interface net.imglib2.RealLocalizable
localize, positionAsDoubleArray, positionAsRealPoint

- Field Detail
  - calibration
```
protected final double[] calibration
```
  - neighborhood
```
protected final AbstractNeighborhood<T extends RealType<T>> neighborhood
```
  - center
```
protected final long[] center
```
- Constructor Detail
  - SpotNeighborhood
```
public SpotNeighborhood(Spot spot,
                        ImgPlus<T> img)
```
- Method Detail
  - cursor
```
public final SpotNeighborhoodCursor<T> cursor()
```
    Specified by:
    
    cursor in interface IterableInterval<T extends RealType<T>>
    
    Specified by:
    
    cursor in interface IterableRealInterval<T extends RealType<T>>
  - localizingCursor
```
public SpotNeighborhoodCursor<T> localizingCursor()
```
    Specified by:
    
    localizingCursor in interface IterableInterval<T extends RealType<T>>
    
    Specified by:
    
    localizingCursor in interface IterableRealInterval<T extends RealType<T>>
  - size
```
public long size()
```
    Specified by:
    
    size in interface IterableRealInterval<T extends RealType<T>>
  - firstElement
```
public T firstElement()
```
    Specified by:
    
    firstElement in interface IterableRealInterval<T extends RealType<T>>
  - iterationOrder
```
public Object iterationOrder()
```
    Specified by:
    
    iterationOrder in interface IterableRealInterval<T extends RealType<T>>
  - realMin
```
public double realMin(int d)
```
    Specified by:
    
    realMin in interface Interval
    
    Specified by:
    
    realMin in interface RealInterval
  - realMin
```
public void realMin(double[] min)
```
    Specified by:
    
    realMin in interface RealInterval
  - realMin
```
public void realMin(RealPositionable min)
```
    Specified by:
    
    realMin in interface RealInterval
  - realMax
```
public double realMax(int d)
```
    Specified by:
    
    realMax in interface Interval
    
    Specified by:
    
    realMax in interface RealInterval
  - realMax
```
public void realMax(double[] max)
```
    Specified by:
    
    realMax in interface RealInterval
  - realMax
```
public void realMax(RealPositionable max)
```
    Specified by:
    
    realMax in interface RealInterval
  - numDimensions
```
public int numDimensions()
```
    Specified by:
    
    numDimensions in interface EuclideanSpace
  - iterator
```
public SpotNeighborhoodCursor<T> iterator()
```
    Specified by:
    
    iterator in interface Iterable<T extends RealType<T>>
  - min
```
public long min(int d)
```
    Specified by:
    
    min in interface Interval
  - min
```
public void min(long[] min)
```
    Specified by:
    
    min in interface Interval
  - min
```
public void min(Positionable min)
```
    Specified by:
    
    min in interface Interval
  - max
```
public long max(int d)
```
    Specified by:
    
    max in interface Interval
  - max
```
public void max(long[] max)
```
    Specified by:
    
    max in interface Interval
  - max
```
public void max(Positionable max)
```
    Specified by:
    
    max in interface Interval
  - dimensions
```
public void dimensions(long[] dimensions)
```
    Specified by:
    
    dimensions in interface Dimensions
  - dimension
```
public long dimension(int d)
```
    Specified by:
    
    dimension in interface Dimensions
    
    Specified by:
    
    dimension in interface Interval
  - localize
```
public void localize(int[] position)
```
    Specified by:
    
    localize in interface Localizable
  - localize
```
public void localize(long[] position)
```
    Specified by:
    
    localize in interface Localizable
  - getIntPosition
```
public int getIntPosition(int d)
```
    Specified by:
    
    getIntPosition in interface Localizable
  - getLongPosition
```
public long getLongPosition(int d)
```
    Specified by:
    
    getLongPosition in interface Localizable
  - localize
```
public void localize(float[] position)
```
    Specified by:
    
    localize in interface RealLocalizable
  - localize
```
public void localize(double[] position)
```
    Specified by:
    
    localize in interface RealLocalizable
  - getFloatPosition
```
public float getFloatPosition(int d)
```
    Specified by:
    
    getFloatPosition in interface Localizable
    
    Specified by:
    
    getFloatPosition in interface RealLocalizable
  - getDoublePosition
```
public double getDoublePosition(int d)
```
    Specified by:
    
    getDoublePosition in interface Localizable
    
    Specified by:
    
    getDoublePosition in interface RealLocalizable
  - getStructuringElementBoundingBox
```
public Interval getStructuringElementBoundingBox()
```
    Specified by:
    
    getStructuringElementBoundingBox in interface Neighborhood<T extends RealType<T>>

Class SpotNeighborhood<T extends RealType<T>>

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Methods inherited from interface java.lang.Iterable

Methods inherited from interface net.imglib2.Interval

Methods inherited from interface net.imglib2.RealInterval

Methods inherited from interface net.imglib2.Dimensions

Methods inherited from interface net.imglib2.Localizable

Methods inherited from interface net.imglib2.RealLocalizable

Field Detail

calibration

neighborhood

center

Constructor Detail

SpotNeighborhood

Method Detail

cursor

localizingCursor

size

firstElement

iterationOrder

realMin

realMin

realMin

realMax

realMax

realMax

numDimensions

iterator

min

min

min

max

max

max

dimensions

dimension

localize

localize

getIntPosition

getLongPosition

localize

localize

getFloatPosition

getDoublePosition

getStructuringElementBoundingBox