AbstractLayerAlignmentParam (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.trakem2.align.AbstractLayerAlignmentParam

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

ElasticLayerAlignment.Param, RegularizedAffineLayerAlignment.Param
```
public class AbstractLayerAlignmentParam
extends Object
implements Serializable
```
See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field and Description
`int`	`desiredModelIndex`
`int`	`expectedModelIndex`
`float`	`identityTolerance`
`float`	`maxEpsilon` Maximal accepted alignment error in px
`int`	`maxIterationsOptimize`
`int`	`maxNumFailures` Maximal number of consecutive slices for which no model could be found
`int`	`maxNumNeighbors` Maximal number of consecutive sections to be tested for an alignment model
`int`	`maxNumThreads`
`int`	`maxPlateauwidthOptimize`
`float`	`minInlierRatio` Inlier/candidates ratio
`int`	`minNumInliers` Minimal absolute number of inliers
`static String[]`	`modelStrings` Transformation models for choice
`boolean`	`multipleHypotheses`
`AlignmentUtils.ParamPointMatch`	`ppm`
`boolean`	`rejectIdentity` Ignore identity transform up to a given tolerance
`boolean`	`visualize`
`boolean`	`widestSetOnly`

Constructor Summary

Constructors
Constructor and Description
`AbstractLayerAlignmentParam()`
AbstractLayerAlignmentParam(int SIFTfdBins, int SIFTfdSize, float SIFTinitialSigma, int SIFTmaxOctaveSize, int SIFTminOctaveSize, int SIFTsteps, boolean clearCache, int maxNumThreadsSift, float rod, int desiredModelIndex, int expectedModelIndex, float identityTolerance, float maxEpsilon, int maxIterationsOptimize, int maxNumFailures, int maxNumNeighbors, int maxNumThreads, int maxPlateauwidthOptimize, float minInlierRatio, int minNumInliers, boolean multipleHypotheses, boolean widestSetOnly, boolean rejectIdentity, boolean visualize)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method and Description

AbstractLayerAlignmentParam clone()

boolean setupSIFT(String title)
- Methods inherited from class java.lang.Object
  equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`AbstractLayerAlignmentParam`	`clone()`
`boolean`	`setupSIFT(String title)`

Field Detail
- ppm
```
public final AlignmentUtils.ParamPointMatch ppm
```
- maxEpsilon
```
public float maxEpsilon
```
  Maximal accepted alignment error in px
- minInlierRatio
```
public float minInlierRatio
```
  Inlier/candidates ratio
- minNumInliers
```
public int minNumInliers
```
  Minimal absolute number of inliers
- modelStrings
```
public static final String[] modelStrings
```
  Transformation models for choice
- expectedModelIndex
```
public int expectedModelIndex
```
- multipleHypotheses
```
public boolean multipleHypotheses
```
- widestSetOnly
```
public boolean widestSetOnly
```
- rejectIdentity
```
public boolean rejectIdentity
```
  Ignore identity transform up to a given tolerance
- identityTolerance
```
public float identityTolerance
```
- maxNumNeighbors
```
public int maxNumNeighbors
```
  Maximal number of consecutive sections to be tested for an alignment model
- maxNumFailures
```
public int maxNumFailures
```
  Maximal number of consecutive slices for which no model could be found
- desiredModelIndex
```
public int desiredModelIndex
```
- maxIterationsOptimize
```
public int maxIterationsOptimize
```
- maxPlateauwidthOptimize
```
public int maxPlateauwidthOptimize
```
- visualize
```
public boolean visualize
```
- maxNumThreads
```
public int maxNumThreads
```

Constructor Detail

AbstractLayerAlignmentParam
```
public AbstractLayerAlignmentParam()
```

AbstractLayerAlignmentParam

public AbstractLayerAlignmentParam(int SIFTfdBins,
                                   int SIFTfdSize,
                                   float SIFTinitialSigma,
                                   int SIFTmaxOctaveSize,
                                   int SIFTminOctaveSize,
                                   int SIFTsteps,
                                   boolean clearCache,
                                   int maxNumThreadsSift,
                                   float rod,
                                   int desiredModelIndex,
                                   int expectedModelIndex,
                                   float identityTolerance,
                                   float maxEpsilon,
                                   int maxIterationsOptimize,
                                   int maxNumFailures,
                                   int maxNumNeighbors,
                                   int maxNumThreads,
                                   int maxPlateauwidthOptimize,
                                   float minInlierRatio,
                                   int minNumInliers,
                                   boolean multipleHypotheses,
                                   boolean widestSetOnly,
                                   boolean rejectIdentity,
                                   boolean visualize)

Method Detail

setupSIFT

public boolean setupSIFT(String title)

clone

public AbstractLayerAlignmentParam clone()

Overrides:: clone in class Object

Class AbstractLayerAlignmentParam

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

ppm

maxEpsilon

minInlierRatio

minNumInliers

modelStrings

expectedModelIndex

multipleHypotheses

widestSetOnly

rejectIdentity

identityTolerance

maxNumNeighbors

maxNumFailures

desiredModelIndex

maxIterationsOptimize

maxPlateauwidthOptimize

visualize

maxNumThreads

Constructor Detail

AbstractLayerAlignmentParam

AbstractLayerAlignmentParam

Method Detail

setupSIFT

clone