RegistrationAlgorithm (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- vib.oldregistration.RegistrationAlgorithm

Direct Known Subclasses:

AffineFromLandmarks, BooksteinFromLandmarks, RigidFromLandmarks
```
public abstract class RegistrationAlgorithm
extends Object
```

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class RegistrationAlgorithm.ImagePoint

Nested Classes
Modifier and Type	Class and Description
`static class`	`RegistrationAlgorithm.ImagePoint`

Field Summary

Fields
Modifier and Type Field and Description

boolean keepSourceImages

ij.ImagePlus[] sourceImages

Fields
Modifier and Type	Field and Description
`boolean`	`keepSourceImages`
`ij.ImagePlus[]`	`sourceImages`

Constructor Summary

Constructors
Constructor and Description

RegistrationAlgorithm()

Constructors
Constructor and Description
`RegistrationAlgorithm()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`generateTransformation()`
`ij.ImagePlus`	`getDomain()`
`ij.ImagePlus`	`getFloating()`
`ij.ImagePlus`	`getModel()`
`ij.ImagePlus`	`getTemplate()`
`void`	`invalidateTransformation()`
`boolean`	`isTransformationValid()`
`void`	`loadImages(FileAndChannel f0, FileAndChannel f1)`
`ij.ImagePlus`	`register()`
`ij.ImagePlus`	`register(NamedPointSet templatePointSet, NamedPointSet floatingPointSet)`
`void`	`setImages(ij.ImagePlus template, ij.ImagePlus domain)`
`void`	`transformDomainToTemplate(int x, int y, int z, RegistrationAlgorithm.ImagePoint result)`
`void`	`transformDomainToTemplateWorld(double x, double y, double z, Point3d result)`
`void`	`transformTemplateToDomain(int x, int y, int z, RegistrationAlgorithm.ImagePoint result)`
`void`	`transformTemplateToDomainWorld(double x, double y, double z, Point3d result)`
`void`	`validateTransformation()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

keepSourceImages
```
public boolean keepSourceImages
```

sourceImages
```
public ij.ImagePlus[] sourceImages
```

Constructor Detail
- RegistrationAlgorithm
```
public RegistrationAlgorithm()
```

Method Detail

getTemplate
```
public ij.ImagePlus getTemplate()
```

getDomain
```
public ij.ImagePlus getDomain()
```

getModel
```
public ij.ImagePlus getModel()
```

getFloating
```
public ij.ImagePlus getFloating()
```

loadImages

public void loadImages(FileAndChannel f0,
                       FileAndChannel f1)

invalidateTransformation

public void invalidateTransformation()

validateTransformation
```
public void validateTransformation()
```

isTransformationValid

public boolean isTransformationValid()

setImages

public void setImages(ij.ImagePlus template,
                      ij.ImagePlus domain)

generateTransformation
```
public void generateTransformation()
```

transformDomainToTemplate

public void transformDomainToTemplate(int x,
                                      int y,
                                      int z,
                                      RegistrationAlgorithm.ImagePoint result)

transformDomainToTemplateWorld

public void transformDomainToTemplateWorld(double x,
                                           double y,
                                           double z,
                                           Point3d result)

transformTemplateToDomain

public void transformTemplateToDomain(int x,
                                      int y,
                                      int z,
                                      RegistrationAlgorithm.ImagePoint result)

transformTemplateToDomainWorld

public void transformTemplateToDomainWorld(double x,
                                           double y,
                                           double z,
                                           Point3d result)

register

public ij.ImagePlus register(NamedPointSet templatePointSet,
                             NamedPointSet floatingPointSet)

Class RegistrationAlgorithm

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

keepSourceImages

sourceImages

Constructor Detail

RegistrationAlgorithm

Method Detail

getTemplate

getDomain

getModel

getFloating

loadImages

invalidateTransformation

validateTransformation

isTransformationValid

setImages

generateTransformation

transformDomainToTemplate

transformDomainToTemplateWorld

transformTemplateToDomain

transformTemplateToDomainWorld

register

register