BalloonSegmentation_ (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Frame
      - javax.swing.JFrame
        
        sc.fiji.balloonSegmentation.BalloonSegmentation_

All Implemented Interfaces:

ij.plugin.PlugIn, ActionListener, AdjustmentListener, ItemListener, KeyListener, MouseListener, MouseWheelListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer, WindowConstants
```
public class BalloonSegmentation_
extends JFrame
implements ActionListener, AdjustmentListener, ItemListener, WindowListener, KeyListener, MouseListener, MouseWheelListener, ij.plugin.PlugIn
```
TODO

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class javax.swing.JFrame
  JFrame.AccessibleJFrame
- Nested classes/interfaces inherited from class java.awt.Frame
  Frame.AccessibleAWTFrame
- Nested classes/interfaces inherited from class java.awt.Window
  Window.AccessibleAWTWindow, Window.Type
- Nested classes/interfaces inherited from class java.awt.Container
  Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type Field and Description

static String files_dir

static PrintWriter print_writer
- Fields inherited from class javax.swing.JFrame
  accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled
- Fields inherited from class java.awt.Frame
  CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR
- Fields inherited from class java.awt.Component
  BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
- Fields inherited from interface javax.swing.WindowConstants
  DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE
- Fields inherited from interface java.awt.image.ImageObserver
  ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Fields
Modifier and Type	Field and Description
`static String`	`files_dir`
`static PrintWriter`	`print_writer`

Constructor Summary

Constructors
Constructor and Description

BalloonSegmentation_()

Constructors
Constructor and Description
`BalloonSegmentation_()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`actionPerformed(ActionEvent e)`
`void`	`adjustmentValueChanged(AdjustmentEvent e)`
`void`	`clearAll()` Clear all before closing
`static void`	`drawCurrent()`
`void`	`FindImgBoundaries(int PixLevel)` Find the boundaries of the object with a watershed algorithm
`Roi[]`	`getRois()`
`void`	`InitiateBalloons(ArrayList X0, ArrayList Y0)` creates a population of palloons from a list of points in the image
`void`	`InitiateBalloons(int x0, int y0)` adds 1 balloon to the population of existing balloons
`void`	`InitiateImageData(int channel, int slice)` Split red / green blue data prior to processing here the slice index start at 1, like imageJ does
`void`	`InitiateSegmentation()` Initiate the list of BalloonPopulation, convert to RGB if require this is meant to be run once in the image registration process
`void`	`itemStateChanged(ItemEvent e)`
`void`	`keyPressed(KeyEvent e)`
`void`	`keyReleased(KeyEvent e)`
`void`	`keyTyped(KeyEvent e)`
`static void`	`makeOverlayCurrent(int stage)`
`void`	`makeReport()` Write a file showing
`String`	`modifiers(int flags)`
`void`	`mouseClicked(MouseEvent e)`
`void`	`mouseEntered(MouseEvent e)`
`void`	`mouseExited(MouseEvent e)`
`void`	`mousePressed(MouseEvent e)`
`void`	`mouseReleased(MouseEvent e)`
`void`	`mouseWheelMoved(MouseWheelEvent event)`
`void`	`MoveBalloons(int x0, int y0)` Moves the closest balloon from x0,y0 to the next clicked position x0, y0
`void`	`RemoveBalloons(int x0, int y0)` removes the closest balloon from x0,y0, if in a near distance
`void`	`run(String arg)`
`void`	`windowActivated(WindowEvent e)`
`void`	`windowClosed(WindowEvent e)`
`void`	`windowClosing(WindowEvent e)`
`void`	`windowDeactivated(WindowEvent e)`
`void`	`windowDeiconified(WindowEvent e)`
`void`	`windowIconified(WindowEvent e)`
`void`	`windowOpened(WindowEvent e)`
`boolean`	`write2File(String directory, String file_name, String info)` Write a file showing

Methods inherited from class java.awt.Frame
addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer
getFont, postEvent

- Field Detail
  - print_writer
```
public static PrintWriter print_writer
```
  - files_dir
```
public static String files_dir
```
- Constructor Detail
  - BalloonSegmentation_
```
public BalloonSegmentation_()
```
- Method Detail
  - run
```
public void run(String arg)
```
    Specified by:
    
    run in interface ij.plugin.PlugIn
  - InitiateSegmentation
```
public void InitiateSegmentation()
```
    Initiate the list of BalloonPopulation, convert to RGB if require this is meant to be run once in the image registration process
  - InitiateImageData
```
public void InitiateImageData(int channel,
                              int slice)
```
    Split red / green blue data prior to processing here the slice index start at 1, like imageJ does
  - FindImgBoundaries
```
public void FindImgBoundaries(int PixLevel)
```
    Find the boundaries of the object with a watershed algorithm
  - makeOverlayCurrent
```
public static void makeOverlayCurrent(int stage)
```
  - drawCurrent
```
public static void drawCurrent()
```
  - InitiateBalloons
```
public void InitiateBalloons(ArrayList X0,
                             ArrayList Y0)
```
    creates a population of palloons from a list of points in the image
  - InitiateBalloons
```
public void InitiateBalloons(int x0,
                             int y0)
```
    adds 1 balloon to the population of existing balloons
  - RemoveBalloons
```
public void RemoveBalloons(int x0,
                           int y0)
```
    removes the closest balloon from x0,y0, if in a near distance
  - MoveBalloons
```
public void MoveBalloons(int x0,
                         int y0)
```
    Moves the closest balloon from x0,y0 to the next clicked position x0, y0
  - write2File
```
public boolean write2File(String directory,
                          String file_name,
                          String info)
```
    Write a file showing
  - makeReport
```
public void makeReport()
```
    Write a file showing
  - clearAll
```
public void clearAll()
```
    Clear all before closing
  - adjustmentValueChanged
```
public void adjustmentValueChanged(AdjustmentEvent e)
```
    Specified by:
    
    adjustmentValueChanged in interface AdjustmentListener
  - actionPerformed
```
public void actionPerformed(ActionEvent e)
```
    Specified by:
    
    actionPerformed in interface ActionListener
  - itemStateChanged
```
public void itemStateChanged(ItemEvent e)
```
    Specified by:
    
    itemStateChanged in interface ItemListener
  - windowActivated
```
public void windowActivated(WindowEvent e)
```
    Specified by:
    
    windowActivated in interface WindowListener
  - windowClosing
```
public void windowClosing(WindowEvent e)
```
    Specified by:
    
    windowClosing in interface WindowListener
  - windowClosed
```
public void windowClosed(WindowEvent e)
```
    Specified by:
    
    windowClosed in interface WindowListener
  - windowDeactivated
```
public void windowDeactivated(WindowEvent e)
```
    Specified by:
    
    windowDeactivated in interface WindowListener
  - windowDeiconified
```
public void windowDeiconified(WindowEvent e)
```
    Specified by:
    
    windowDeiconified in interface WindowListener
  - windowIconified
```
public void windowIconified(WindowEvent e)
```
    Specified by:
    
    windowIconified in interface WindowListener
  - windowOpened
```
public void windowOpened(WindowEvent e)
```
    Specified by:
    
    windowOpened in interface WindowListener
  - getRois
```
public Roi[] getRois()
```
  - mouseWheelMoved
```
public void mouseWheelMoved(MouseWheelEvent event)
```
    Specified by:
    
    mouseWheelMoved in interface MouseWheelListener
  - mouseReleased
```
public void mouseReleased(MouseEvent e)
```
    Specified by:
    
    mouseReleased in interface MouseListener
  - mousePressed
```
public void mousePressed(MouseEvent e)
```
    Specified by:
    
    mousePressed in interface MouseListener
  - mouseExited
```
public void mouseExited(MouseEvent e)
```
    Specified by:
    
    mouseExited in interface MouseListener
  - mouseEntered
```
public void mouseEntered(MouseEvent e)
```
    Specified by:
    
    mouseEntered in interface MouseListener
  - mouseClicked
```
public void mouseClicked(MouseEvent e)
```
    Specified by:
    
    mouseClicked in interface MouseListener
  - keyReleased
```
public void keyReleased(KeyEvent e)
```
    Specified by:
    
    keyReleased in interface KeyListener
  - keyTyped
```
public void keyTyped(KeyEvent e)
```
    Specified by:
    
    keyTyped in interface KeyListener
  - keyPressed
```
public void keyPressed(KeyEvent e)
```
    Specified by:
    
    keyPressed in interface KeyListener
  - modifiers
```
public String modifiers(int flags)
```

Class BalloonSegmentation_

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

Nested classes/interfaces inherited from class java.awt.Frame

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class javax.swing.JFrame

Fields inherited from class java.awt.Frame

Fields inherited from class java.awt.Component

Fields inherited from interface javax.swing.WindowConstants

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class javax.swing.JFrame

Methods inherited from class java.awt.Frame

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.MenuContainer

Field Detail

print_writer

files_dir

Constructor Detail

BalloonSegmentation_

Method Detail

run

InitiateSegmentation

InitiateImageData

FindImgBoundaries

makeOverlayCurrent

drawCurrent

InitiateBalloons

InitiateBalloons

RemoveBalloons

MoveBalloons

write2File

makeReport

clearAll

adjustmentValueChanged

actionPerformed

itemStateChanged

windowActivated

windowClosing

windowClosed

windowDeactivated

windowDeiconified

windowIconified

windowOpened

getRois

mouseWheelMoved

mouseReleased

mousePressed

mouseExited

mouseEntered

mouseClicked

keyReleased

keyTyped

keyPressed

modifiers