Constructor Detail

• DetectionSegmentation

  public DetectionSegmentation()

Method Detail

• extractBeadsLaPlaceImgLib

  public static <T extends RealType<T>> ArrayList<DifferenceOfGaussianPeak<T>> extractBeadsLaPlaceImgLib(Image<T> img,
                                                                                                         float initialSigma,
                                                                                                         float minPeakValue,
                                                                                                         float minInitialPeakValue)

• extractBeadsLaPlaceImgLib

  public static <T extends RealType<T>> ArrayList<DifferenceOfGaussianPeak<T>> extractBeadsLaPlaceImgLib(Image<T> img,
                                                                                                         OutOfBoundsStrategyFactory<T> oobsFactory,
                                                                                                         float imageSigma,
                                                                                                         float initialSigma,
                                                                                                         float minPeakValue,
                                                                                                         float minInitialPeakValue,
                                                                                                         int stepsPerOctave,
                                                                                                         boolean findMax,
                                                                                                         boolean findMin,
                                                                                                         int debugLevel)

• extractBeadsLaPlaceImgLib

  public static <T extends RealType<T>> ArrayList<DifferenceOfGaussianPeak<T>> extractBeadsLaPlaceImgLib(Image<T> img,
                                                                                                         OutOfBoundsStrategyFactory<T> oobsFactory,
                                                                                                         float imageSigma,
                                                                                                         float sigma1,
                                                                                                         float sigma2,
                                                                                                         float minPeakValue,
                                                                                                         float minInitialPeakValue,
                                                                                                         boolean findMax,
                                                                                                         boolean findMin,
                                                                                                         int debugLevel)

• computeK

  public static double computeK(float stepsPerOctave)

• computeK

  public static double computeK(int stepsPerOctave)

• computeKWeight

  public static float computeKWeight(float k)

• computeSigma

  public static float[] computeSigma(float k,
                                     float initialSigma)

• getDiffSigma

  public static float getDiffSigma(float sigmaA,
                                   float sigmaB)

• computeSigmaDiff

  public static float[] computeSigmaDiff(float[] sigma,
                                         float imageSigma)