Constructor Detail

• SkeletonResult

  public SkeletonResult(int numOfTrees)

Method Detail

• setNumOfTrees

  public void setNumOfTrees(int numOfTrees)

• setBranches

  public void setBranches(int[] numberOfBranches)

• setJunctions

  public void setJunctions(int[] numberOfJunctions)

• setEndPoints

  public void setEndPoints(int[] numberOfEndPoints)

• setJunctionVoxels

  public void setJunctionVoxels(int[] numberOfJunctionVoxels)

• setSlabs

  public void setSlabs(int[] numberOfSlabs)

• setNumberOfVoxels

  public void setNumberOfVoxels(int[] numberOfVoxels)

• setTriples

  public void setTriples(int[] numberOfTriplePoints)

• setQuadruples

  public void setQuadruples(int[] numberOfQuadruplePoints)

• setAverageBranchLength

  public void setAverageBranchLength(double[] averageBranchLength)

• setMaximumBranchLength

  public void setMaximumBranchLength(double[] maximumBranchLength)

• setListOfEndPoints

  public void setListOfEndPoints(ArrayList<Point> listOfEndPoints)

• setListOfJunctionVoxels

  public void setListOfJunctionVoxels(ArrayList<Point> listOfJunctionVoxels)

• setListOfSlabVoxels

  public void setListOfSlabVoxels(ArrayList<Point> listOfSlabVoxels)

• setListOfStartingSlabVoxels

  public void setListOfStartingSlabVoxels(ArrayList<Point> listOfStartingSlabVoxels)

• setShortestPathList

  public void setShortestPathList(ArrayList<Double> shortestPathList)

• setSpStartPosition

  public void setSpStartPosition(double[][] spStartPosition)

• setGraph

  public void setGraph(Graph[] graph)

• getNumOfTrees

  public int getNumOfTrees()

• getBranches

  public int[] getBranches()

• getJunctions

  public int[] getJunctions()

• getEndPoints

  public int[] getEndPoints()

• getJunctionVoxels

  public int[] getJunctionVoxels()

• getSlabs

  public int[] getSlabs()

• getTriples

  public int[] getTriples()

• getQuadruples

  public int[] getQuadruples()

• getAverageBranchLength

  public double[] getAverageBranchLength()

• getMaximumBranchLength

  public double[] getMaximumBranchLength()

• getNumberOfVoxels

  public int[] getNumberOfVoxels()

• getListOfEndPoints

  public ArrayList<Point> getListOfEndPoints()

• getListOfJunctionVoxels

  public ArrayList<Point> getListOfJunctionVoxels()

• getListOfSlabVoxels

  public ArrayList<Point> getListOfSlabVoxels()

• getListOfStartingSlabVoxels

  public ArrayList<Point> getListOfStartingSlabVoxels()

• getShortestPathList

  public ArrayList<Double> getShortestPathList()

• getSpStartPosition

  public double[][] getSpStartPosition()

• getGraph

  public Graph[] getGraph()

• calculateNumberOfVoxels

  public int[] calculateNumberOfVoxels()

  Calculates and saves the sum of voxels for every tree as the sum of end points, junction voxels and "normal" voxels.

  numberOfEndPoints, numberOfJunctionVoxels and numberOfSlabs must exit and have at least numOfTrees fields each.

  Returns:

  An array with the number of voxels in every tree