AbstractSearch (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- sc.fiji.snt.tracing.AbstractSearch

All Implemented Interfaces:

Runnable, SearchInterface

Direct Known Subclasses:

BiSearch, SearchThread
```
public abstract class AbstractSearch
extends Object
implements SearchInterface, Runnable
```
Abstract class for path-finding over RandomAccessibleIntervals

Author:

Cameron Arshadi

Field Summary

Fields
Modifier and Type	Field and Description
`protected RandomAccessibleInterval<? extends RealType<?>>`	`img`
`protected RandomAccess<? extends RealType<?>>`	`imgAccess`
`int`	`imgDepth`
`int`	`imgHeight`
`int`	`imgWidth`
`protected ArrayList<SearchProgressCallback>`	`progressListeners`
`protected long`	`reportEveryMilliseconds`
`protected String`	`spacing_units`
`protected int`	`timeoutSeconds`
`protected boolean`	`verbose`
`protected long`	`xMax`
`protected long`	`xMin`
`protected double`	`xSep`
`protected long`	`yMax`
`protected long`	`yMin`
`protected double`	`ySep`
`protected long`	`zMax`
`protected long`	`zMin`
`protected double`	`zSep`

Constructor Summary

Constructors
Modifier	Constructor and Description
`protected`	`AbstractSearch(Dataset image, int timeoutSeconds, long reportEveryMilliseconds)`
`protected`	`AbstractSearch(ij.ImagePlus imagePlus, int timeoutSeconds, long reportEveryMilliseconds)`
`protected`	`AbstractSearch(RandomAccessibleInterval<? extends RealType<?>> image, ij.measure.Calibration calibration, int timeoutSeconds, long reportEveryMilliseconds)`
`protected`	`AbstractSearch(SNT snt, ij.ImagePlus imagePlus)`
`protected`	`AbstractSearch(SNT snt, RandomAccessibleInterval<? extends RealType<?>> image)`

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method and Description
`abstract void`	`addProgressListener(SearchProgressCallback callback)`
`abstract long`	`pointsConsideredInSearch()`
`abstract void`	`printStatus()`
`protected abstract void`	`reportPointsInSearch()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface sc.fiji.snt.tracing.SearchInterface
getResult

Methods inherited from interface java.lang.Runnable
run

Field Detail

img

protected final RandomAccessibleInterval<? extends RealType<?>> img

imgAccess

protected final RandomAccess<? extends RealType<?>> imgAccess

imgWidth
```
public final int imgWidth
```

imgHeight
```
public final int imgHeight
```

imgDepth
```
public final int imgDepth
```

xMin
```
protected final long xMin
```

yMin
```
protected final long yMin
```

zMin
```
protected final long zMin
```

xMax
```
protected final long xMax
```

yMax
```
protected final long yMax
```

zMax
```
protected final long zMax
```

xSep
```
protected final double xSep
```

ySep
```
protected final double ySep
```

zSep
```
protected final double zSep
```

spacing_units
```
protected final String spacing_units
```

timeoutSeconds
```
protected int timeoutSeconds
```

reportEveryMilliseconds
```
protected long reportEveryMilliseconds
```

progressListeners

protected ArrayList<SearchProgressCallback> progressListeners

verbose
```
protected final boolean verbose
```

Constructor Detail

AbstractSearch

protected AbstractSearch(ij.ImagePlus imagePlus,
                         int timeoutSeconds,
                         long reportEveryMilliseconds)

AbstractSearch

protected AbstractSearch(Dataset image,
                         int timeoutSeconds,
                         long reportEveryMilliseconds)

AbstractSearch

protected AbstractSearch(RandomAccessibleInterval<? extends RealType<?>> image,
                         ij.measure.Calibration calibration,
                         int timeoutSeconds,
                         long reportEveryMilliseconds)

AbstractSearch

protected AbstractSearch(SNT snt,
                         ij.ImagePlus imagePlus)

AbstractSearch

protected AbstractSearch(SNT snt,
                         RandomAccessibleInterval<? extends RealType<?>> image)

Method Detail

addProgressListener

public abstract void addProgressListener(SearchProgressCallback callback)

printStatus
```
public abstract void printStatus()
```

reportPointsInSearch

protected abstract void reportPointsInSearch()

pointsConsideredInSearch

public abstract long pointsConsideredInSearch()

Class AbstractSearch

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Methods inherited from interface sc.fiji.snt.tracing.SearchInterface

Methods inherited from interface java.lang.Runnable

Field Detail

img

imgAccess

imgWidth

imgHeight

imgDepth

xMin

yMin

zMin

xMax

yMax

zMax

xSep

ySep

zSep

spacing_units

timeoutSeconds

reportEveryMilliseconds

progressListeners

verbose

Constructor Detail

AbstractSearch

AbstractSearch

AbstractSearch

AbstractSearch

AbstractSearch

Method Detail

addProgressListener

printStatus

reportPointsInSearch

pointsConsideredInSearch