InterpolatedAffineModel3D (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.models.AbstractModel<M>
- - mpicbg.models.InterpolatedModel<A,B,M>
 - - mpicbg.models.InvertibleInterpolatedModel<A,B,InterpolatedAffineModel3D<A,B>>
 - - mpicbg.models.InterpolatedAffineModel3D<A,B>

All Implemented Interfaces:

Serializable, Affine3D<InterpolatedAffineModel3D<A,B>>, Boundable, CoordinateTransform, InverseBoundable, InverseCoordinateTransform, InvertibleBoundable, InvertibleCoordinateTransform, Model<InterpolatedAffineModel3D<A,B>>
```
public final class InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>
extends InvertibleInterpolatedModel<A,B,InterpolatedAffineModel3D<A,B>>
implements Affine3D<InterpolatedAffineModel3D<A,B>>, InvertibleBoundable
```
3D affine specialization of InterpolatedModel. Implements interpolation directly by linear matrix interpolation.

Author:

Stephan Saalfeld <saalfelds@janelia.hhmi.org>

See Also:

Serialized Form

Field Summary

Fields
Modifier and Type Field and Description

protected AffineModel3D affine

protected double[] afs

protected double[] bfs
- Fields inherited from class mpicbg.models.InterpolatedModel
  a, b, l1, lambda
- Fields inherited from class mpicbg.models.AbstractModel
  cost, rnd

Fields
Modifier and Type	Field and Description
`protected AffineModel3D`	`affine`
`protected double[]`	`afs`
`protected double[]`	`bfs`

Constructor Summary

Constructors
Constructor and Description

InterpolatedAffineModel3D(A model, B regularizer, double lambda)

Constructors
Constructor and Description
`InterpolatedAffineModel3D(A model, B regularizer, double lambda)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`double[]`	`apply(double[] location)` Apply the `CoordinateTransform` to a location.
`void`	`applyInPlace(double[] location)` Apply the `CoordinateTransform` to a location.
`double[]`	`applyInverse(double[] point)` Apply the inverse of the model to a point location
`void`	`applyInverseInPlace(double[] point)` apply the inverse of the model to a point location
`void`	`concatenate(InterpolatedAffineModel3D<A,B> affine3d)`
`InterpolatedAffineModel3D<A,B>`	`copy()` Clone the model.
`AffineModel3D`	`createAffineModel3D()`
`InterpolatedAffineModel3D<A,B>`	`createInverse()`
`void`	`estimateBounds(double[] min, double[] max)` Estimate the bounds of an n-dimensional interval [min,max] with min and max being n-dimensional vectors.
`void`	`estimateInverseBounds(double[] min, double[] max)` Estimate the bounds of an n-dimensional interval [min,max] with min and max being n-dimensional vectors.
`<P extends PointMatch> void`	`fit(Collection<P> matches)` Fit the `Model` to a set of data points minimizing the global transfer error.
`void`	`interpolate()`
`void`	`preConcatenate(InterpolatedAffineModel3D<A,B> affine3d)`
`void`	`set(InterpolatedAffineModel3D<A,B> m)` Set the model to m
`void`	`toArray(double[] data)` Write the 12 parameters of the affine into a double array.
`void`	`toMatrix(double[][] data)` Write the 12 parameters of the affine into a 4x3 double array.

Methods inherited from class mpicbg.models.InterpolatedModel
getA, getB, getLambda, getMinNumMatches, setLambda

Methods inherited from class mpicbg.models.AbstractModel
betterThan, filter, filter, filter, filterRansac, filterRansac, filterRansac, filterRansac, fit, fit, getCost, icp, localSmoothnessFilter, ransac, ransac, setCost, test, test

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
 - affine
```
protected final AffineModel3D affine
```
 - afs
```
protected final double[] afs
```
 - bfs
```
protected final double[] bfs
```
- Constructor Detail
 - InterpolatedAffineModel3D
```
public InterpolatedAffineModel3D(A model,
 B regularizer,
 double lambda)
```
- Method Detail
 - interpolate
```
public void interpolate()
```
 - fit
```
public  void fit(Collection matches)
 throws NotEnoughDataPointsException,
 IllDefinedDataPointsException
```
 Description copied from interface: Model
 
 Fit the Model to a set of data points minimizing the global transfer error. This is assumed to be implemented as a weighted least squares minimization. Use ransac and/ or Model.filter(java.util.Collection, java.util.Collection, double, int) to remove outliers from your data points.
 The estimated model transfers match.p1.local to match.p2.world.
 
 Specified by:
 
 fit in interface Model<InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 
 Overrides:
 
 fit in class InterpolatedModel<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D,InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 
 Parameters:
 
 matches - set of point correpondences
 
 Throws:
 
 NotEnoughDataPointsException - if matches does not contain enough data points
 
 IllDefinedDataPointsException - if the set of data points is inappropriate to solve the Model
 - set
```
public void set(InterpolatedAffineModel3D<A,B> m)
```
 Description copied from interface: Model
 
 Set the model to m
 
 Specified by:
 
 set in interface Model<InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 
 Overrides:
 
 set in class InterpolatedModel<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D,InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 - copy
```
public InterpolatedAffineModel3D<A,B> copy()
```
 Description copied from interface: Model
 
 Clone the model.
 
 Specified by:
 
 copy in interface Model<InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 
 Overrides:
 
 copy in class InvertibleInterpolatedModel<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D,InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 - apply
```
public double[] apply(double[] location)
```
 Description copied from interface: CoordinateTransform
 
 Apply the CoordinateTransform to a location.
 
 Specified by:
 
 apply in interface CoordinateTransform
 
 Overrides:
 
 apply in class InterpolatedModel<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D,InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 
 Returns:
 
 transformed location
 - applyInPlace
```
public void applyInPlace(double[] location)
```
 Description copied from interface: CoordinateTransform
 
 Apply the CoordinateTransform to a location.
 
 Specified by:
 
 applyInPlace in interface CoordinateTransform
 
 Overrides:
 
 applyInPlace in class InterpolatedModel<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D,InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 - applyInverse
```
public double[] applyInverse(double[] point)
 throws NoninvertibleModelException
```
 Description copied from interface: InverseCoordinateTransform
 
 Apply the inverse of the model to a point location
 
 Specified by:
 
 applyInverse in interface InverseCoordinateTransform
 
 Overrides:
 
 applyInverse in class InvertibleInterpolatedModel<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D,InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 
 Returns:
 
 transformed point
 
 Throws:
 
 NoninvertibleModelException
 - applyInverseInPlace
```
public void applyInverseInPlace(double[] point)
 throws NoninvertibleModelException
```
 Description copied from interface: InverseCoordinateTransform
 
 apply the inverse of the model to a point location
 
 Specified by:
 
 applyInverseInPlace in interface InverseCoordinateTransform
 
 Overrides:
 
 applyInverseInPlace in class InvertibleInterpolatedModel<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D,InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 
 Throws:
 
 NoninvertibleModelException
 - createInverse
```
public InterpolatedAffineModel3D<A,B> createInverse()
```
 Specified by:
 
 createInverse in interface Affine3D<InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 
 Specified by:
 
 createInverse in interface InvertibleCoordinateTransform
 
 Overrides:
 
 createInverse in class InvertibleInterpolatedModel<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D,InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 - createAffineModel3D
```
public AffineModel3D createAffineModel3D()
```
 - preConcatenate
```
public void preConcatenate(InterpolatedAffineModel3D<A,B> affine3d)
```
 Specified by:
 
 preConcatenate in interface Affine3D<InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 - concatenate
```
public void concatenate(InterpolatedAffineModel3D<A,B> affine3d)
```
 Specified by:
 
 concatenate in interface Affine3D<InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 - toArray
```
public void toArray(double[] data)
```
 Description copied from interface: Affine3D
 
 Write the 12 parameters of the affine into a double array. The order is m00, m10, m20, m01, m11, m21, m02, m12, m22, m03, m13, m23
 
 Specified by:
 
 toArray in interface Affine3D<InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 - toMatrix
```
public void toMatrix(double[][] data)
```
 Description copied from interface: Affine3D
 Write the 12 parameters of the affine into a 4x3 double array. The order is
```
 [0][0] -> m00; [0][1] -> m01; [0][2] -> m02; [0][3] -> m03
 [1][0] -> m10; [1][1] -> m11; [1][2] -> m12; [1][3] -> m13
 [2][0] -> m20; [2][1] -> m21; [2][2] -> m22; [2][3] -> m23
 
```
 Specified by:
 
 toMatrix in interface Affine3D<InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model & Affine3D>>
 - estimateBounds
```
public void estimateBounds(double[] min,
 double[] max)
```
 Description copied from interface: Boundable
 
 Estimate the bounds of an n-dimensional interval [min,max] with min and max being n-dimensional vectors.
 
 Specified by:
 
 estimateBounds in interface Boundable
 - estimateInverseBounds
```
public void estimateInverseBounds(double[] min,
 double[] max)
 throws NoninvertibleModelException
```
 Description copied from interface: InverseBoundable
 
 Estimate the bounds of an n-dimensional interval [min,max] with min and max being n-dimensional vectors.
 
 Specified by:
 
 estimateInverseBounds in interface InverseBoundable
 
 Throws:
 
 NoninvertibleModelException

Class InterpolatedAffineModel3D<A extends Model<A> & Affine3D<A>,B extends Model<B> & Affine3D<B>>

Field Summary

Fields inherited from class mpicbg.models.InterpolatedModel

Fields inherited from class mpicbg.models.AbstractModel

Constructor Summary

Method Summary

Methods inherited from class mpicbg.models.InterpolatedModel

Methods inherited from class mpicbg.models.AbstractModel

Methods inherited from class java.lang.Object

Field Detail

affine

afs

bfs

Constructor Detail

InterpolatedAffineModel3D

Method Detail

interpolate

fit

set

copy

apply

applyInPlace

applyInverse

applyInverseInPlace

createInverse

createAffineModel3D

preConcatenate

concatenate

toArray

toMatrix

estimateBounds

estimateInverseBounds