Field Detail

• path

  protected final String path

Constructor Detail

• Partition

  public Partition(String path,
                   int[] timepointIdsSequence,
                   int[] setupIdsSequence,
                   int[] timepointIdsPartition,
                   int[] setupIdsPartition)

  Create a new Partition description.

  Parameters:

  path - path to the hdf5 file for this partition

  timepointIdsSequence -

  setupIdsSequence -

  timepointIdsPartition -

  setupIdsPartition -

• Partition

  public Partition(String path,
                   Map<Integer,Integer> timepointIdSequenceToPartition,
                   Map<Integer,Integer> setupIdSequenceToPartition)

  Create a new Partition description.

  Parameters:

  path - path to the hdf5 file for this partition

  timepointIdSequenceToPartition -

  setupIdSequenceToPartition -

Method Detail

• getPath

  public String getPath()

  Get the path to the hdf5 file for this partition.

  Returns:

  path to the hdf5 file for this partition.

• getTimepointIdSequenceToPartition

  public Map<Integer,Integer> getTimepointIdSequenceToPartition()

  Get a map from timepoint ids of the full sequence to timepoint ids of this partition.

• getSetupIdSequenceToPartition

  public Map<Integer,Integer> getSetupIdSequenceToPartition()

  Get a map from setup ids of the full sequence to setup ids of this partition.

• contains

  public boolean contains(ViewId viewId)

  Does this partition contain the given view (timepoint-setup pair)?

  Parameters:

  viewId - view (timepoint and setup id wrt. the full sequence)

  Returns:

  whether this partition contains the given view.

• split

  public static ArrayList<Partition> split(List<TimePoint> timepoints,
                                           List<? extends BasicViewSetup> setups,
                                           int timepointsPerPartition,
                                           int setupsPerPartition,
                                           String basename)

  Split a sequence into partitions, each containing a specified number of timepoints and setups.

  Parameters:

  timepoints - list of all TimePoints.

  setups - list of all BasicViewSetups.

  timepointsPerPartition - how many timepoints should each partition contain (if this is ≤0, put do not split timepoints across partitions).

  setupsPerPartition - how many setups should each partition contain (if this is ≤0, put do not split setups across partitions).

  basename - This is used to generate paths for the partitions. Partitions are named "basename-TT-SS.h5" where TT and SS are the index of the timepoint and setup batch, respectively.

  Returns:

  list of partitions.