AmiraImporter (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- ini.trakem2.io.AmiraImporter

```
public class AmiraImporter
extends Object
```
Parses an amira labelfield and imports the labels as AreaList instances into the project tree.

Constructor Summary

Constructors
Constructor and Description

AmiraImporter()

Constructors
Constructor and Description
`AmiraImporter()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static Collection<AreaList>`	`extractAmiraLabels(ij.ImagePlus labels, AmiraParameters ap, Layer first_layer, double xo, double yo)` Returns an ArrayList containing all AreaList objects.
`static Map<Float,AreaList>`	`extractAreaLists(ij.ImagePlus imp, Layer first_layer, double base_x, double base_y, float alpha, boolean add_background)` Returns a map of label vs AreaList.
`static Collection<AreaList>`	`importAmiraLabels(Layer first_layer, double xo, double yo, String default_dir)` Returns the array of AreaList or null if the file dialog is canceled.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- AmiraImporter
```
public AmiraImporter()
```

Method Detail

importAmiraLabels

public static Collection<AreaList> importAmiraLabels(Layer first_layer,
                                                     double xo,
                                                     double yo,
                                                     String default_dir)

Returns the array of AreaList or null if the file dialog is canceled. The xo,yo is the pivot of reference.

extractAmiraLabels

public static Collection<AreaList> extractAmiraLabels(ij.ImagePlus labels,
                                                      AmiraParameters ap,
                                                      Layer first_layer,
                                                      double xo,
                                                      double yo)

Returns an ArrayList containing all AreaList objects. The xo,yo is the pivot of reference.

extractAreaLists

public static Map<Float,AreaList> extractAreaLists(ij.ImagePlus imp,
                                                   Layer first_layer,
                                                   double base_x,
                                                   double base_y,
                                                   float alpha,
                                                   boolean add_background)

Returns a map of label vs AreaList.

Class AmiraImporter

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

AmiraImporter

Method Detail

importAmiraLabels

extractAmiraLabels

extractAreaLists