SurfacePlotGroup (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.scijava.java3d.SceneGraphObject
- - org.scijava.java3d.Node
  - - org.scijava.java3d.Group
    - - org.scijava.java3d.BranchGroup
      - ij3d.ContentNode
        
        surfaceplot.SurfacePlotGroup

All Implemented Interfaces:

AdjustmentListener, EventListener
```
public class SurfacePlotGroup
extends ContentNode
implements AdjustmentListener
```
This class extends ContentNode to render a Content as a surface plot. By default, the current slice of the image stack is rendered. When the slider in the original image window is dragged, the surface plot is automatically updated.

Author:

Benjamin Schmid

Field Summary
- Fields inherited from class org.scijava.java3d.BranchGroup
  ALLOW_DETACH
- Fields inherited from class org.scijava.java3d.Group
  ALLOW_CHILDREN_EXTEND, ALLOW_CHILDREN_READ, ALLOW_CHILDREN_WRITE, ALLOW_COLLISION_BOUNDS_READ, ALLOW_COLLISION_BOUNDS_WRITE
- Fields inherited from class org.scijava.java3d.Node
  ALLOW_AUTO_COMPUTE_BOUNDS_READ, ALLOW_AUTO_COMPUTE_BOUNDS_WRITE, ALLOW_BOUNDS_READ, ALLOW_BOUNDS_WRITE, ALLOW_COLLIDABLE_READ, ALLOW_COLLIDABLE_WRITE, ALLOW_LOCAL_TO_VWORLD_READ, ALLOW_LOCALE_READ, ALLOW_PARENT_READ, ALLOW_PICKABLE_READ, ALLOW_PICKABLE_WRITE, ENABLE_COLLISION_REPORTING, ENABLE_PICK_REPORTING

Constructor Summary

Constructors
Constructor and Description
`SurfacePlotGroup(Content c)` Constructs a surface plot for the given ContentInstant.
`SurfacePlotGroup(ContentInstant c)` Constructs a surface plot for the given Content.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`adjustmentValueChanged(AdjustmentEvent e)` Implements AdjustmentListener interface to automatically update the surface plot when the slice slider in the stack window is dragged.
`void`	`channelsUpdated(boolean[] channels)` This method is called when the channels of the Content have changed.
`void`	`clearDisplayedData()`
`void`	`colorUpdated(Color3f color)` This method is called when the color of the Content has changed.
`void`	`eyePtChanged(View view)` This method is called when the view direction has changed.
`void`	`getCenter(Tuple3d center)` Stores the center coordinate of this ContentNode in the specified Tuple3d
`void`	`getMax(Tuple3d max)` Stores the maximum coordinate of this ContentNode in the specified Tuple3d
`void`	`getMin(Tuple3d min)` Stores the minimum coordinate of this ContentNode in the specified Tuple3d
`int`	`getSlice()` Returns the currently displayed slice.
`float`	`getVolume()` Returns the volume of this ContentNode.
`void`	`lutUpdated(int[] r, int[] g, int[] b, int[] a)` This method is called when the color lookup tables of the Content have changed.
`void`	`restoreDisplayedData(String path, String name)`
`void`	`setSlice(int slice)` Set the slice to display.
`void`	`shadeUpdated(boolean shaded)` This method is called when the 'shade' attribute of the Content has changed.
`void`	`swapDisplayedData(String path, String name)`
`void`	`thresholdUpdated(int threshold)` This method is called when the threshold of the Content has changed.
`void`	`transparencyUpdated(float transparency)` This method is called when the transparency of the Content has changed.

Methods inherited from class org.scijava.java3d.BranchGroup
cloneNode, compile, detach, pickAll, pickAll, pickAllSorted, pickAllSorted, pickAny, pickAny, pickClosest, pickClosest

Methods inherited from class org.scijava.java3d.Group
addChild, getAllChildren, getAlternateCollisionTarget, getChild, getCollisionBounds, indexOfChild, insertChild, moveTo, numChildren, removeAllChildren, removeChild, removeChild, setAlternateCollisionTarget, setChild, setCollisionBounds

Methods inherited from class org.scijava.java3d.Node
cloneTree, cloneTree, cloneTree, cloneTree, cloneTree, cloneTree, duplicateNode, getBounds, getBoundsAutoCompute, getCollidable, getLocale, getLocalToVworld, getLocalToVworld, getParent, getPickable, setBounds, setBoundsAutoCompute, setCollidable, setPickable

Methods inherited from class org.scijava.java3d.SceneGraphObject
clearCapability, clearCapabilityIsFrequent, duplicateSceneGraphObject, getCapability, getCapabilityIsFrequent, getName, getUserData, isCompiled, isLive, setCapability, setCapabilityIsFrequent, setName, setUserData, toString, updateNodeReferences

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - SurfacePlotGroup
```
public SurfacePlotGroup(Content c)
```
    Constructs a surface plot for the given ContentInstant.
    
    Parameters:
    
    c -
  - SurfacePlotGroup
```
public SurfacePlotGroup(ContentInstant c)
```
    Constructs a surface plot for the given Content.
    
    Parameters:
    
    c -
- Method Detail
  - setSlice
```
public void setSlice(int slice)
```
    Set the slice to display.
    
    Parameters:
    
    slice - index starting at 1
  - getSlice
```
public int getSlice()
```
    Returns the currently displayed slice.
  - adjustmentValueChanged
```
public void adjustmentValueChanged(AdjustmentEvent e)
```
    Implements AdjustmentListener interface to automatically update the surface plot when the slice slider in the stack window is dragged.
    
    Specified by:
    
    adjustmentValueChanged in interface AdjustmentListener
    
    Parameters:
    
    e -
  - getMax
```
public void getMax(Tuple3d max)
```
    Description copied from class: ContentNode
    
    Stores the maximum coordinate of this ContentNode in the specified Tuple3d
    
    Specified by:
    
    getMax in class ContentNode
    
    See Also:
    
    getMax
  - getMin
```
public void getMin(Tuple3d min)
```
    Description copied from class: ContentNode
    
    Stores the minimum coordinate of this ContentNode in the specified Tuple3d
    
    Specified by:
    
    getMin in class ContentNode
    
    See Also:
    
    getMin
  - getCenter
```
public void getCenter(Tuple3d center)
```
    Description copied from class: ContentNode
    
    Stores the center coordinate of this ContentNode in the specified Tuple3d
    
    Specified by:
    
    getCenter in class ContentNode
    
    See Also:
    
    getCenter
  - eyePtChanged
```
public void eyePtChanged(View view)
```
    Description copied from class: ContentNode
    
    This method is called when the view direction has changed.
    
    Specified by:
    
    eyePtChanged in class ContentNode
    
    See Also:
    
    eyePtChanged
  - thresholdUpdated
```
public void thresholdUpdated(int threshold)
```
    Description copied from class: ContentNode
    
    This method is called when the threshold of the Content has changed.
    
    Specified by:
    
    thresholdUpdated in class ContentNode
    
    See Also:
    
    thresholdUpdated
  - lutUpdated
```
public void lutUpdated(int[] r,
                       int[] g,
                       int[] b,
                       int[] a)
```
    Description copied from class: ContentNode
    
    This method is called when the color lookup tables of the Content have changed.
    
    Specified by:
    
    lutUpdated in class ContentNode
    
    See Also:
    
    lutUpdated
  - channelsUpdated
```
public void channelsUpdated(boolean[] channels)
```
    Description copied from class: ContentNode
    
    This method is called when the channels of the Content have changed.
    
    Specified by:
    
    channelsUpdated in class ContentNode
    
    See Also:
    
    channelsUpdated
  - getVolume
```
public float getVolume()
```
    Description copied from class: ContentNode
    
    Returns the volume of this ContentNode.
    
    Specified by:
    
    getVolume in class ContentNode
    
    Returns:
    
    See Also:
    
    getVolume
  - colorUpdated
```
public void colorUpdated(Color3f color)
```
    Description copied from class: ContentNode
    
    This method is called when the color of the Content has changed.
    
    Specified by:
    
    colorUpdated in class ContentNode
    
    See Also:
    
    colorUpdated
  - transparencyUpdated
```
public void transparencyUpdated(float transparency)
```
    Description copied from class: ContentNode
    
    This method is called when the transparency of the Content has changed.
    
    Specified by:
    
    transparencyUpdated in class ContentNode
    
    See Also:
    
    transparencyUpdated
  - shadeUpdated
```
public void shadeUpdated(boolean shaded)
```
    Description copied from class: ContentNode
    
    This method is called when the 'shade' attribute of the Content has changed.
    
    Specified by:
    
    shadeUpdated in class ContentNode
    
    See Also:
    
    shadeUpdated
  - restoreDisplayedData
```
public void restoreDisplayedData(String path,
                                 String name)
```
    Specified by:
    
    restoreDisplayedData in class ContentNode
  - clearDisplayedData
```
public void clearDisplayedData()
```
    Specified by:
    
    clearDisplayedData in class ContentNode
  - swapDisplayedData
```
public void swapDisplayedData(String path,
                              String name)
```
    Specified by:
    
    swapDisplayedData in class ContentNode

Class SurfacePlotGroup

Field Summary

Fields inherited from class org.scijava.java3d.BranchGroup

Fields inherited from class org.scijava.java3d.Group

Fields inherited from class org.scijava.java3d.Node

Constructor Summary

Method Summary

Methods inherited from class org.scijava.java3d.BranchGroup

Methods inherited from class org.scijava.java3d.Group

Methods inherited from class org.scijava.java3d.Node

Methods inherited from class org.scijava.java3d.SceneGraphObject

Methods inherited from class java.lang.Object

Constructor Detail

SurfacePlotGroup

SurfacePlotGroup

Method Detail

setSlice

getSlice

adjustmentValueChanged

getMax

getMin

getCenter

eyePtChanged

thresholdUpdated

lutUpdated

channelsUpdated

getVolume

colorUpdated

transparencyUpdated

shadeUpdated

restoreDisplayedData

clearDisplayedData

swapDisplayedData