Constructor Detail

• SequenceDescription

  public SequenceDescription(TimePoints timepoints,
                             Map<Integer,ViewSetup> setups)

• SequenceDescription

  public SequenceDescription(TimePoints timepoints,
                             Map<Integer,ViewSetup> setups,
                             ImgLoader imgLoader)

• SequenceDescription

  public SequenceDescription(TimePoints timepoints,
                             Map<Integer,ViewSetup> setups,
                             ImgLoader imgLoader,
                             MissingViews missingViews)

• SequenceDescription

  public SequenceDescription(TimePoints timepoints,
                             Collection<ViewSetup> setups)

• SequenceDescription

  public SequenceDescription(TimePoints timepoints,
                             Collection<ViewSetup> setups,
                             ImgLoader imgLoader)

• SequenceDescription

  public SequenceDescription(TimePoints timepoints,
                             Collection<ViewSetup> setups,
                             ImgLoader imgLoader,
                             MissingViews missingViews)

• SequenceDescription

  protected SequenceDescription()

Method Detail

• getViewDescription

  public ViewDescription getViewDescription(int timepointId,
                                            int setupId)

  convenience method. shortcut for getViewDescriptions().get( new ViewId( timepointId, setupId ) )

  Parameters:

  timepointId -

  setupId -

  Returns:

• getViewDescription

  public ViewDescription getViewDescription(ViewId view)

  convenience method. shortcut for getViewDescriptions().get( view )

  Parameters:

  view -

  Returns:

• getAllTiles

  public Map<Integer,Tile> getAllTiles()

  Get all Tiles occurring in any setup.

  Returns:

  a map from tile id to Tile

• getAllTilesOrdered

  public List<Tile> getAllTilesOrdered()

  Get all Tiles occurring in any setup, ordered by tile id.

  Returns:

  a list of Tiles, ordered by tile id.

• getAllChannels

  public Map<Integer,Channel> getAllChannels()

  Get all Channels occurring in any setup.

  Returns:

  a map from channel id to Channel

• getAllChannelsOrdered

  public List<Channel> getAllChannelsOrdered()

  Get all Channels occurring in any setup, ordered by channel id.

  Returns:

  a list of Channels, ordered by channel id.

• getAllIlluminations

  public Map<Integer,Illumination> getAllIlluminations()

  Get all Illuminations occurring in any setups.

  Returns:

  a map from illumination id to Illumination

• getAllIlluminationsOrdered

  public List<Illumination> getAllIlluminationsOrdered()

  Get all Illuminations occurring in any setup, ordered by illumination id.

  Returns:

  a list of Illuminations, ordered by illumination id.

• getAllAngles

  public Map<Integer,Angle> getAllAngles()

  Get all Angles occurring in any setups.

  Returns:

  a map from angle id to Angle

• getAllAnglesOrdered

  public List<Angle> getAllAnglesOrdered()

  Get all Angles occurring in any setup, ordered by angle id.

  Returns:

  a list of Angles, ordered by angle id.

• createViewDescription

  protected ViewDescription createViewDescription(int timepointId,
                                                  int setupId)

  Specified by:

  createViewDescription in class AbstractSequenceDescription<ViewSetup,ViewDescription,ImgLoader>