TubularGeodesicsTracer (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- java.lang.Thread
- - sc.fiji.snt.tracing.TubularGeodesicsTracer

All Implemented Interfaces:

Runnable, SearchInterface
```
public class TubularGeodesicsTracer
extends Thread
implements SearchInterface
```
A tracer thread for FijiITKInterface.TubularGeodesics (assumes the tubularity add-on to be installed)

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field and Description
`protected float`	`end_x_image`
`protected float`	`end_y_image`
`protected float`	`end_z_image`
`protected sc.fiji.snt.tracing.PathResult`	`lastPathResult`
`protected File`	`oofFile`
`protected ArrayList<SearchProgressCallback>`	`progressListeners`
`protected String`	`spacing_units`
`protected float`	`start_x_image`
`protected float`	`start_y_image`
`protected float`	`start_z_image`
`protected double`	`x_spacing`
`protected double`	`y_spacing`
`protected double`	`z_spacing`

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor and Description
`TubularGeodesicsTracer(File oofFile, float start_x_image, float start_y_image, float start_z_image, float end_x_image, float end_y_image, float end_z_image, double x_spacing, double y_spacing, double z_spacing, String spacing_units)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`addProgressListener(SearchProgressCallback callback)`
`Path`	`getResult()`
`void`	`reportFinished(boolean success)`
`void`	`reportProgress(float proportionDone)`
`void`	`requestStop()`
`void`	`run()`

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

x_spacing
```
protected double x_spacing
```

y_spacing
```
protected double y_spacing
```

z_spacing
```
protected double z_spacing
```

spacing_units
```
protected String spacing_units
```

oofFile
```
protected File oofFile
```

start_x_image
```
protected float start_x_image
```

start_y_image
```
protected float start_y_image
```

start_z_image
```
protected float start_z_image
```

end_x_image
```
protected float end_x_image
```

end_y_image
```
protected float end_y_image
```

end_z_image
```
protected float end_z_image
```

lastPathResult

protected sc.fiji.snt.tracing.PathResult lastPathResult

progressListeners

protected ArrayList<SearchProgressCallback> progressListeners

Constructor Detail

TubularGeodesicsTracer

public TubularGeodesicsTracer(File oofFile,
                              float start_x_image,
                              float start_y_image,
                              float start_z_image,
                              float end_x_image,
                              float end_y_image,
                              float end_z_image,
                              double x_spacing,
                              double y_spacing,
                              double z_spacing,
                              String spacing_units)

Method Detail

getResult
```
public Path getResult()
```
Specified by:

getResult in interface SearchInterface

addProgressListener

public void addProgressListener(SearchProgressCallback callback)

reportProgress

public void reportProgress(float proportionDone)

requestStop
```
public void requestStop()
```

run
```
public void run()
```
Specified by:

run in interface Runnable

Overrides:

run in class Thread

reportFinished

public void reportFinished(boolean success)

Class TubularGeodesicsTracer

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

x_spacing

y_spacing

z_spacing

spacing_units

oofFile

start_x_image

start_y_image

start_z_image

end_x_image

end_y_image

end_z_image

lastPathResult

progressListeners

Constructor Detail

TubularGeodesicsTracer

Method Detail

getResult

addProgressListener

reportProgress

requestStop

run

reportFinished