Method Detail

• finish

  boolean finish()

  Called last when the fusion is finished (e.g. to write the XML)

  Returns:

  - true if the spimdata was modified, otherwise false

• setXMLData

  void setXMLData(List<TimePoint> timepointsToProcess,
                  List<ViewSetup> newViewSetups)

• exportImage

  <T extends RealType<T> & NativeType<T>> boolean exportImage(RandomAccessibleInterval<T> img,
                                                              BoundingBoxGUI bb,
                                                              TimePoint tp,
                                                              ViewSetup vs)

  Exports the image (min and max intensity will be computed)

  Parameters:

  img - - Note, in rare cases this can be null (i.e. do nothing)

  bb - - the bounding box used to fuse this image

  tp - - the current (new) timepoint

  vs - - the current (new) viewsetup

• exportImage

  <T extends RealType<T> & NativeType<T>> boolean exportImage(RandomAccessibleInterval<T> img,
                                                              BoundingBoxGUI bb,
                                                              TimePoint tp,
                                                              ViewSetup vs,
                                                              double min,
                                                              double max)

  Exports the image using a predefined min/max

  Parameters:

  img - - Note, in rare cases this can be null (i.e. do nothing)

  bb - - the bounding box used to fuse this image

  tp - - the current (new) timepoint

  vs - - the current (new) viewsetup

  min - - define min intensity of this image

  max - - define max intensity of this image

• queryParameters

  boolean queryParameters(SpimData2 spimData,
                          boolean is16bit)

  Query the necessary parameters for the fusion (new dialog has to be made)

  Returns:

• queryAdditionalParameters

  void queryAdditionalParameters(GenericDialog gd,
                                 SpimData2 spimData)

  Query additional parameters within the bounding box dialog

• parseAdditionalParameters

  boolean parseAdditionalParameters(GenericDialog gd,
                                    SpimData2 spimData)

  Parse the additional parameters added before within the bounding box dialog

  Parameters:

  gd -

  Returns:

• newInstance

  ImgExport newInstance()

• getDescription

  String getDescription()

  Returns:

  - to be displayed in the generic dialog