PCA_Registration (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- vib.oldregistration.PCA_Registration

All Implemented Interfaces:: ij.plugin.PlugIn

public class PCA_Registration
extends Object
implements ij.plugin.PlugIn

Constructor Summary

Constructors
Constructor and Description

PCA_Registration()

Constructors
Constructor and Description
`PCA_Registration()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`int`	`aboveThresholdLengthAlong(vib.oldregistration.PrincipalComponents pcaResults, int eigenvectorNumber, ij.ImagePlus image, Threshold threshold)`
`void`	`chooseStacks()`
`void`	`closeSourceImages()`
`vib.oldregistration.PrincipalComponents`	`doPCA(ij.ImagePlus image, Threshold threshold, boolean drawAxes)`
`void`	`getSampleDistribution(ij.ImagePlus image, double[] com, int[] valueHistogram)`
`Color`	`indexToColor(int index)`
`void`	`run(String arg)`
`static void`	`scaleDoubleArray(double[] a, double factor)`
`Threshold`	`threshold(int[] valueHistogram, float fraction)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- PCA_Registration
```
public PCA_Registration()
```

Method Detail

run
```
public void run(String arg)
```
Specified by:

run in interface ij.plugin.PlugIn

closeSourceImages
```
public void closeSourceImages()
```

threshold

public Threshold threshold(int[] valueHistogram,
                           float fraction)

indexToColor
```
public Color indexToColor(int index)
```

scaleDoubleArray

public static void scaleDoubleArray(double[] a,
                                    double factor)

doPCA

public vib.oldregistration.PrincipalComponents doPCA(ij.ImagePlus image,
                                                     Threshold threshold,
                                                     boolean drawAxes)

getSampleDistribution

public void getSampleDistribution(ij.ImagePlus image,
                                  double[] com,
                                  int[] valueHistogram)

aboveThresholdLengthAlong

public int aboveThresholdLengthAlong(vib.oldregistration.PrincipalComponents pcaResults,
                                     int eigenvectorNumber,
                                     ij.ImagePlus image,
                                     Threshold threshold)

chooseStacks
```
public void chooseStacks()
```

Class PCA_Registration

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

PCA_Registration

Method Detail

run

closeSourceImages

threshold

indexToColor

scaleDoubleArray

doPCA

getSampleDistribution

aboveThresholdLengthAlong

chooseStacks