BoundingBoxGUI (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- spim.fiji.spimdata.boundingbox.BoundingBox
- - spim.process.fusion.boundingbox.BoundingBoxGUI

All Implemented Interfaces:

Comparable<BoundingBox>, Dimensions, EuclideanSpace, Interval, RealInterval

Direct Known Subclasses:

AutomaticBoundingBox, AutomaticReorientation, BigDataViewerBoundingBox, PreDefinedBoundingBox
```
public class BoundingBoxGUI
extends BoundingBox
```

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

class BoundingBoxGUI.ManageListeners

Nested Classes
Modifier and Type	Class and Description
`class`	`BoundingBoxGUI.ManageListeners`

Field Summary

Fields
Modifier and Type	Field and Description
`protected boolean`	`changedSpimDataObject`
`static int`	`defaultImgType`
`static int[]`	`defaultMax`
`static int[]`	`defaultMin`
`static int`	`defaultPixelType`
`protected int`	`downsampling`
`protected int`	`imgtype`
`static String[]`	`imgTypes`
`protected int`	`pixelType`
`static String[]`	`pixelTypes`
`protected SpimData2`	`spimData`
`static int`	`staticDownsampling`
`protected List<ViewId>`	`viewIdsToProcess` which viewIds to process, set in queryParameters

Fields inherited from class spim.fiji.spimdata.boundingbox.BoundingBox
max, min, title

Constructor Summary

Constructors
Constructor and Description
`BoundingBoxGUI(SpimData2 spimData, List<ViewId> viewIdsToProcess)`
`BoundingBoxGUI(SpimData2 spimData, List<ViewId> viewIdsToProcess, BoundingBox bb)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`boolean`	`cleanUp()` Called before the XML is potentially saved
`static boolean`	`computeMaxBoundingBoxDimensions(SpimData2 spimData, List<ViewId> viewIdsToProcess, double[] minBB, double[] maxBB)`
`String`	`getDescription()`
`long[]`	`getDimensions()`
`int`	`getDownSampling()`
`<T extends ComplexType<T> & NativeType<T>> ImgFactory<T>`	`getImgFactory(T type)`
`int`	`getImgType()`
`int`	`getPixelType()`
`protected GenericDialog`	`getSimpleDialog(boolean compress, boolean allowModifyDimensions)`
`BoundingBoxGUI`	`newInstance(SpimData2 spimData, List<ViewId> viewIdsToProcess)`
`protected static long`	`numPixels(long[] min, long[] max, int downsampling)`
`boolean`	`queryParameters(Fusion fusion, ImgExport imgExport)`
`boolean`	`queryParameters(Fusion fusion, ImgExport imgExport, boolean allowModifyDimensions)` Query the necessary parameters for the bounding box
`protected void`	`setUpDefaultValues(int[] rangeMin, int[] rangeMax)` populates this.min[] and this.max[] from the defaultMin and defaultMax

Methods inherited from class spim.fiji.spimdata.boundingbox.BoundingBox
compareTo, dimension, dimensions, getMax, getMin, getTitle, max, max, max, min, min, min, numDimensions, realMax, realMax, realMax, realMin, realMin, realMin, setTitle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.Interval
maxAsLongArray, maxAsPoint, minAsLongArray, minAsPoint

Methods inherited from interface net.imglib2.RealInterval
maxAsDoubleArray, maxAsRealPoint, minAsDoubleArray, minAsRealPoint

Methods inherited from interface net.imglib2.Dimensions
allPositive, allPositive, dimensions, dimensionsAsLongArray, dimensionsAsPoint, verify, verify, verifyAllPositive, verifyAllPositive

Field Detail

staticDownsampling
```
public static int staticDownsampling
```

defaultMin
```
public static int[] defaultMin
```

defaultMax
```
public static int[] defaultMax
```

pixelTypes
```
public static String[] pixelTypes
```

defaultPixelType
```
public static int defaultPixelType
```

pixelType
```
protected int pixelType
```

imgTypes
```
public static String[] imgTypes
```

defaultImgType
```
public static int defaultImgType
```

imgtype
```
protected int imgtype
```

viewIdsToProcess
```
protected final List<ViewId> viewIdsToProcess
```
which viewIds to process, set in queryParameters

spimData
```
protected final SpimData2 spimData
```

downsampling
```
protected int downsampling
```

changedSpimDataObject

protected boolean changedSpimDataObject

Constructor Detail

BoundingBoxGUI

public BoundingBoxGUI(SpimData2 spimData,
                      List<ViewId> viewIdsToProcess)

Parameters:: spimData -; viewIdsToProcess - - which view ids to fuse

BoundingBoxGUI

public BoundingBoxGUI(SpimData2 spimData,
                      List<ViewId> viewIdsToProcess,
                      BoundingBox bb)

Method Detail

queryParameters

public boolean queryParameters(Fusion fusion,
                               ImgExport imgExport)

queryParameters
```
public boolean queryParameters(Fusion fusion,
                               ImgExport imgExport,
                               boolean allowModifyDimensions)
```
Query the necessary parameters for the bounding box

Parameters:

fusion - - the fusion for which the bounding box is computed, can be null

imgExport - - the export module used, can be null

Returns:

getSimpleDialog

protected GenericDialog getSimpleDialog(boolean compress,
                                        boolean allowModifyDimensions)

setUpDefaultValues
```
protected void setUpDefaultValues(int[] rangeMin,
                                  int[] rangeMax)
```
populates this.min[] and this.max[] from the defaultMin and defaultMax

Parameters:

rangeMin - - will be populated with the maximal dimension that all views span

rangeMax - - will be populated with the maximal dimension that all views span

newInstance

public BoundingBoxGUI newInstance(SpimData2 spimData,
                                  List<ViewId> viewIdsToProcess)

Parameters:: spimData -; viewIdsToProcess - - which view ids to fuse
Returns:: - a new instance without any special properties

getDescription
```
public String getDescription()
```
Returns:

- to be displayed in the generic dialog

cleanUp
```
public boolean cleanUp()
```
Called before the XML is potentially saved

Returns:

- true if the spimdata was modified, otherwise false

getDownSampling
```
public int getDownSampling()
```

getPixelType
```
public int getPixelType()
```

getImgType
```
public int getImgType()
```

getImgFactory

public <T extends ComplexType<T> & NativeType<T>> ImgFactory<T> getImgFactory(T type)

getDimensions
```
public long[] getDimensions()
```
Returns:

- the final dimensions including downsampling of this bounding box (to instantiate an img)

computeMaxBoundingBoxDimensions

public static boolean computeMaxBoundingBoxDimensions(SpimData2 spimData,
                                                      List<ViewId> viewIdsToProcess,
                                                      double[] minBB,
                                                      double[] maxBB)

Parameters:: spimData -; viewIdsToProcess -; minBB -; maxBB -
Returns:: - true if the SpimData object was modified, otherwise false

numPixels

protected static long numPixels(long[] min,
                                long[] max,
                                int downsampling)

Class BoundingBoxGUI

Nested Class Summary

Field Summary

Fields inherited from class spim.fiji.spimdata.boundingbox.BoundingBox

Constructor Summary

Method Summary

Methods inherited from class spim.fiji.spimdata.boundingbox.BoundingBox

Methods inherited from class java.lang.Object

Methods inherited from interface net.imglib2.Interval

Methods inherited from interface net.imglib2.RealInterval

Methods inherited from interface net.imglib2.Dimensions

Field Detail

staticDownsampling

defaultMin

defaultMax

pixelTypes

defaultPixelType

pixelType

imgTypes

defaultImgType

imgtype

viewIdsToProcess

spimData

downsampling

changedSpimDataObject

Constructor Detail

BoundingBoxGUI

BoundingBoxGUI

Method Detail

queryParameters

queryParameters

getSimpleDialog

setUpDefaultValues

newInstance

getDescription

cleanUp

getDownSampling

getPixelType

getImgType

getImgFactory

getDimensions

computeMaxBoundingBoxDimensions

numPixels