TransformMeshMapping (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- mpicbg.ij.InvertibleTransformMapping<T>
- - mpicbg.ij.TransformMeshMapping<T>

All Implemented Interfaces:

InverseMapping<T>, InvertibleMapping<T>, Mapping<T>

Direct Known Subclasses:

TransformMeshMappingWithMasks
```
public class TransformMeshMapping<T extends TransformMesh>
extends InvertibleTransformMapping<T>
```
Use a TransformMesh to map and map inversely source into target which is an InvertibleMapping.

Version:

0.1b

Author:

Stephan Saalfeld <saalfeld@mpi-cbg.de>

Field Summary
- Fields inherited from class mpicbg.ij.InvertibleTransformMapping
  transform

Constructor Summary

Constructors
Constructor and Description

TransformMeshMapping(T t)

Constructors
Constructor and Description
`TransformMeshMapping(T t)`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`protected static void`	`calculateBoundingBox(ArrayList<PointMatch> pm, double[] min, double[] max)`
`protected static void`	`calculateBoundingBoxInverse(ArrayList<PointMatch> pm, double[] min, double[] max)`
`protected static boolean`	`isInTriangle(double ax, double ay, double bx, double by, double cx, double cy, double tx, double ty)` Checks if a location is inside a given triangle.
`void`	`map(ij.process.ImageProcessor source, ij.process.ImageProcessor target)` Map source into target
`void`	`map(ij.process.ImageProcessor source, ij.process.ImageProcessor target, int numThreads)`
`void`	`mapInterpolated(ij.process.ImageProcessor source, ij.process.ImageProcessor target)` Map source into target using bilinear interpolation.
`void`	`mapInterpolated(ij.process.ImageProcessor source, ij.process.ImageProcessor target, int numThreads)`
`void`	`mapInverse(ij.process.ImageProcessor source, ij.process.ImageProcessor target)` Map inversely source into target
`void`	`mapInverse(ij.process.ImageProcessor source, ij.process.ImageProcessor target, int numThreads)`
`void`	`mapInverseInterpolated(ij.process.ImageProcessor source, ij.process.ImageProcessor target)` Map inversely source into target using bilinear interpolation.
`void`	`mapInverseInterpolated(ij.process.ImageProcessor source, ij.process.ImageProcessor target, int numThreads)`
`protected static void`	`mapTriangle(TransformMesh m, AffineModel2D ai, ij.process.ImageProcessor source, ij.process.ImageProcessor target)`
`protected static void`	`mapTriangleInterpolated(TransformMesh m, AffineModel2D ai, ij.process.ImageProcessor source, ij.process.ImageProcessor target)`
`protected static void`	`mapTriangleInverse(TransformMesh m, AffineModel2D ai, ij.process.ImageProcessor source, ij.process.ImageProcessor target)`
`protected static void`	`mapTriangleInverseInterpolated(TransformMesh m, AffineModel2D ai, ij.process.ImageProcessor source, ij.process.ImageProcessor target)`

Methods inherited from class mpicbg.ij.InvertibleTransformMapping
getTransform

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- TransformMeshMapping
```
public TransformMeshMapping(T t)
```

Method Detail

calculateBoundingBox

protected static final void calculateBoundingBox(ArrayList<PointMatch> pm,
                                                 double[] min,
                                                 double[] max)

Parameters:: pm - PointMatches; min - x = min[0], y = min[1]; max - x = max[0], y = max[1]

isInTriangle

protected static final boolean isInTriangle(double ax,
                                            double ay,
                                            double bx,
                                            double by,
                                            double cx,
                                            double cy,
                                            double tx,
                                            double ty)

Checks if a location is inside a given triangle.

mapTriangle

protected static final void mapTriangle(TransformMesh m,
                                        AffineModel2D ai,
                                        ij.process.ImageProcessor source,
                                        ij.process.ImageProcessor target)

mapTriangleInterpolated

protected static final void mapTriangleInterpolated(TransformMesh m,
                                                    AffineModel2D ai,
                                                    ij.process.ImageProcessor source,
                                                    ij.process.ImageProcessor target)

map

public final void map(ij.process.ImageProcessor source,
                      ij.process.ImageProcessor target,
                      int numThreads)

map
```
public final void map(ij.process.ImageProcessor source,
                      ij.process.ImageProcessor target)
```
Description copied from interface: Mapping

Map source into target

Specified by:

map in interface Mapping<T extends TransformMesh>

Overrides:

map in class InvertibleTransformMapping<T extends TransformMesh>

mapInterpolated

public final void mapInterpolated(ij.process.ImageProcessor source,
                                  ij.process.ImageProcessor target,
                                  int numThreads)

mapInterpolated
```
public final void mapInterpolated(ij.process.ImageProcessor source,
                                  ij.process.ImageProcessor target)
```
Description copied from interface: Mapping

Map source into target using bilinear interpolation.

Specified by:

mapInterpolated in interface Mapping<T extends TransformMesh>

Overrides:

mapInterpolated in class InvertibleTransformMapping<T extends TransformMesh>

calculateBoundingBoxInverse

protected static final void calculateBoundingBoxInverse(ArrayList<PointMatch> pm,
                                                        double[] min,
                                                        double[] max)

Parameters:: pm - PointMatches; min - x = min[0], y = min[1]; max - x = max[0], y = max[1]

mapTriangleInverse

protected static final void mapTriangleInverse(TransformMesh m,
                                               AffineModel2D ai,
                                               ij.process.ImageProcessor source,
                                               ij.process.ImageProcessor target)

mapTriangleInverseInterpolated

protected static final void mapTriangleInverseInterpolated(TransformMesh m,
                                                           AffineModel2D ai,
                                                           ij.process.ImageProcessor source,
                                                           ij.process.ImageProcessor target)

mapInverse

public final void mapInverse(ij.process.ImageProcessor source,
                             ij.process.ImageProcessor target,
                             int numThreads)

mapInverse
```
public final void mapInverse(ij.process.ImageProcessor source,
                             ij.process.ImageProcessor target)
```
Description copied from interface: InverseMapping

Map inversely source into target

Specified by:

mapInverse in interface InverseMapping<T extends TransformMesh>

Overrides:

mapInverse in class InvertibleTransformMapping<T extends TransformMesh>

mapInverseInterpolated

public final void mapInverseInterpolated(ij.process.ImageProcessor source,
                                         ij.process.ImageProcessor target,
                                         int numThreads)

mapInverseInterpolated
```
public final void mapInverseInterpolated(ij.process.ImageProcessor source,
                                         ij.process.ImageProcessor target)
```
Description copied from interface: InverseMapping

Map inversely source into target using bilinear interpolation.

Specified by:

mapInverseInterpolated in interface InverseMapping<T extends TransformMesh>

Overrides:

mapInverseInterpolated in class InvertibleTransformMapping<T extends TransformMesh>

Class TransformMeshMapping<T extends TransformMesh>

Field Summary

Fields inherited from class mpicbg.ij.InvertibleTransformMapping

Constructor Summary

Method Summary

Methods inherited from class mpicbg.ij.InvertibleTransformMapping

Methods inherited from class java.lang.Object

Constructor Detail

TransformMeshMapping

Method Detail

calculateBoundingBox

isInTriangle

mapTriangle

mapTriangleInterpolated

map

map

mapInterpolated

mapInterpolated

calculateBoundingBoxInverse

mapTriangleInverse

mapTriangleInverseInterpolated

mapInverse

mapInverse

mapInverseInterpolated

mapInverseInterpolated