OrderedTransformations (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- vib.transforms.OrderedTransformations

public class OrderedTransformations
extends Object

Constructor Summary

Constructors
Constructor and Description

OrderedTransformations()

Constructors
Constructor and Description
`OrderedTransformations()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`addFirst(OrderedTransformations o)`
`void`	`addFirst(Transform t)`
`void`	`addLast(OrderedTransformations o)`
`void`	`addLast(Transform t)`
`double[]`	`apply(double x, double y, double z)`
`void`	`apply(double x, double y, double z, double[] result)`
`Point3d`	`apply(Point3d p)`
`Object`	`clone()`
`ij.ImagePlus`	`createNewImage(ij.ImagePlus image0, ij.ImagePlus image1, boolean cropToTemplate)`
`ij.ImagePlus`	`createNewImageReal(ij.ImagePlus image0, ij.ImagePlus image1, int xmin, int xmax, int ymin, int ymax, int zmin, int zmax, boolean overlay)`
`ij.ImagePlus`	`createNewImageSingle(ij.ImagePlus image0, ij.ImagePlus image1, boolean cropToTemplate)`
`ij.ImagePlus`	`createNewImageSingle(ij.ImagePlus image, int xmin, int xmax, int ymin, int ymax, int zmin, int zmax)`
`Transform`	`getComponentTransform(int i)`
`OrderedTransformations`	`inverse()`
`int`	`number()`
`void`	`reduce()`
`double`	`scoreTransformation(ij.ImagePlus image0, ij.ImagePlus image1, BoundsInclusive boundsInclusive)`
`double`	`scoreTransformation(ij.ImagePlus image0, ij.ImagePlus image1, int skipPixelsInTemplate)`
`double`	`scoreTransformation(ij.ImagePlus image0, ij.ImagePlus image1, int skipPixelsInTemplate, BoundsInclusive boundsInclusive)`
`double`	`scoreTransformationReal(ij.ImagePlus image0, ij.ImagePlus image1, int skipPixelsInTemplate, BoundsInclusive boundsInclusive)`
`double`	`scoreTransformationThresholded(ij.ImagePlus image0, ij.ImagePlus image1, Threshold threshold0, Threshold threshold1)`
`double`	`scoreTransformationThresholded(ij.ImagePlus image0, ij.ImagePlus image1, Threshold threshold0, Threshold threshold1, BoundsInclusive boundsInclusive)`
`double`	`scoreTransformationThresholded(ij.ImagePlus image0, ij.ImagePlus image1, Threshold threshold0, Threshold threshold1, int skipPixelsInTemplate)`
`double`	`scoreTransformationThresholdedReal(ij.ImagePlus image0, ij.ImagePlus image1, Threshold threshold0, Threshold threshold1, int skipPixelsInTemplate, BoundsInclusive boundsInclusive)`
`String`	`toString()`

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail
- OrderedTransformations
```
public OrderedTransformations()
```

Method Detail

clone
```
public Object clone()
```
Overrides:

clone in class Object

addFirst
```
public void addFirst(Transform t)
```

addLast
```
public void addLast(Transform t)
```

addFirst

public void addFirst(OrderedTransformations o)

addLast

public void addLast(OrderedTransformations o)

number
```
public int number()
```

getComponentTransform

public Transform getComponentTransform(int i)

toString
```
public String toString()
```
Overrides:

toString in class Object

reduce
```
public void reduce()
```

inverse

public OrderedTransformations inverse()

apply

public void apply(double x,
                  double y,
                  double z,
                  double[] result)

apply

public double[] apply(double x,
                      double y,
                      double z)

apply
```
public Point3d apply(Point3d p)
```

scoreTransformation

public double scoreTransformation(ij.ImagePlus image0,
                                  ij.ImagePlus image1,
                                  int skipPixelsInTemplate)

scoreTransformation

public double scoreTransformation(ij.ImagePlus image0,
                                  ij.ImagePlus image1,
                                  BoundsInclusive boundsInclusive)

scoreTransformation

public double scoreTransformation(ij.ImagePlus image0,
                                  ij.ImagePlus image1,
                                  int skipPixelsInTemplate,
                                  BoundsInclusive boundsInclusive)

scoreTransformationReal

public double scoreTransformationReal(ij.ImagePlus image0,
                                      ij.ImagePlus image1,
                                      int skipPixelsInTemplate,
                                      BoundsInclusive boundsInclusive)

scoreTransformationThresholdedReal

public double scoreTransformationThresholdedReal(ij.ImagePlus image0,
                                                 ij.ImagePlus image1,
                                                 Threshold threshold0,
                                                 Threshold threshold1,
                                                 int skipPixelsInTemplate,
                                                 BoundsInclusive boundsInclusive)

scoreTransformationThresholded

public double scoreTransformationThresholded(ij.ImagePlus image0,
                                             ij.ImagePlus image1,
                                             Threshold threshold0,
                                             Threshold threshold1,
                                             BoundsInclusive boundsInclusive)

scoreTransformationThresholded

public double scoreTransformationThresholded(ij.ImagePlus image0,
                                             ij.ImagePlus image1,
                                             Threshold threshold0,
                                             Threshold threshold1)

scoreTransformationThresholded

public double scoreTransformationThresholded(ij.ImagePlus image0,
                                             ij.ImagePlus image1,
                                             Threshold threshold0,
                                             Threshold threshold1,
                                             int skipPixelsInTemplate)

createNewImageReal

public ij.ImagePlus createNewImageReal(ij.ImagePlus image0,
                                       ij.ImagePlus image1,
                                       int xmin,
                                       int xmax,
                                       int ymin,
                                       int ymax,
                                       int zmin,
                                       int zmax,
                                       boolean overlay)

createNewImage

public ij.ImagePlus createNewImage(ij.ImagePlus image0,
                                   ij.ImagePlus image1,
                                   boolean cropToTemplate)

createNewImageSingle

public ij.ImagePlus createNewImageSingle(ij.ImagePlus image,
                                         int xmin,
                                         int xmax,
                                         int ymin,
                                         int ymax,
                                         int zmin,
                                         int zmax)

createNewImageSingle

public ij.ImagePlus createNewImageSingle(ij.ImagePlus image0,
                                         ij.ImagePlus image1,
                                         boolean cropToTemplate)

Class OrderedTransformations

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

OrderedTransformations

Method Detail

clone

addFirst

addLast

addFirst

addLast

number

getComponentTransform

toString

reduce

inverse

apply

apply

apply

scoreTransformation

scoreTransformation

scoreTransformation

scoreTransformationReal

scoreTransformationThresholdedReal

scoreTransformationThresholded

scoreTransformationThresholded

scoreTransformationThresholded

createNewImageReal

createNewImage

createNewImageSingle

createNewImageSingle