public class Stitch_Image_Grid extends Object implements ij.plugin.PlugIn
Modifier and Type | Field and Description |
---|---|
static double |
alphaStatic |
static boolean |
computeOverlapStatic |
static String |
directoryStatic |
static String |
fileNamesStatic |
static String |
fusionMethodStatic |
static int |
gridSizeXStatic |
static int |
gridSizeYStatic |
static String |
handleRGBStatic |
static double |
overlapStatic |
static boolean |
previewOnlyStatic |
static String |
rgbOrderStatic |
static int |
startIStatic |
static int |
startXStatic |
static int |
startYStatic |
static double |
thresholdDisplacementAbsoluteStatic |
static double |
thresholdDisplacementRelativeStatic |
static double |
thresholdRStatic |
static String |
tileConfStatic |
static boolean |
writeOnlyTileConfStatic |
Constructor and Description |
---|
Stitch_Image_Grid() |
Modifier and Type | Method and Description |
---|---|
static String |
getLeadingZeros(int zeros,
int number) |
static PrintWriter |
openFileWrite(String fileName) |
void |
run(String arg0) |
static ij.ImagePlus |
stitchImageGrid(String filenames,
String inputDirectory,
GridLayout gridLayout,
String handleRGB,
String fusionMethod,
String outputFileName,
double overlap,
int startX,
int startY,
int startI,
boolean writeOnlyOutput,
boolean previewOnly,
boolean computeOverlap)
Stitch grid of 2D images
|
public static int gridSizeXStatic
public static int gridSizeYStatic
public static double overlapStatic
public static String directoryStatic
public static String fileNamesStatic
public static String rgbOrderStatic
public static String tileConfStatic
public static boolean writeOnlyTileConfStatic
public static int startXStatic
public static int startYStatic
public static int startIStatic
public static String handleRGBStatic
public static String fusionMethodStatic
public static double alphaStatic
public static double thresholdRStatic
public static double thresholdDisplacementRelativeStatic
public static double thresholdDisplacementAbsoluteStatic
public static boolean previewOnlyStatic
public static boolean computeOverlapStatic
public void run(String arg0)
run
in interface ij.plugin.PlugIn
public static ij.ImagePlus stitchImageGrid(String filenames, String inputDirectory, GridLayout gridLayout, String handleRGB, String fusionMethod, String outputFileName, double overlap, int startX, int startY, int startI, boolean writeOnlyOutput, boolean previewOnly, boolean computeOverlap)
filenames
- file name format (for example: "TiledConfocal_{ii}.lsm")inputDirectory
- input directorygridLayout
- grid layout informationhandleRGB
- RGB mode (@see stitching.CommonFunctions.colorList)fusionMethod
- fusion method (@see stitching.CommonFunctions.methodListCollection)outputFileName
- output file name (for example: "TileConfiguration.txt")overlap
- percentage of overlapstartX
- starting X valuestartY
- starting Y valuestartI
- starting I valuewriteOnlyOutput
- "Save Only Tile Configuration" optionpreviewOnly
- "create only preview" optioncomputeOverlap
- "compute overlap" optionpublic static String getLeadingZeros(int zeros, int number)
public static PrintWriter openFileWrite(String fileName)
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