Constructor Detail

• MergeExample

  public MergeExample()

Method Detail

• mergeHdf5ViewsSetups

  public static void mergeHdf5ViewsSetups(List<String> inputFilenames,
                                          List<ViewTransform> transforms,
                                          String outputXmlFilename)
                                   throws SpimDataException

  Merge multiple HDF5 datasets, where each dataset contains the same timepoints but different views.

  Parameters:

  inputFilenames - xml file names for input datasets

  transforms - transforms to apply to each input dataset

  outputXmlFilename - xml filename into which to store the merged dataset. An HDF5 link master file with the same basename and extension ".h5" will be created that links into the source hdf5s.

  Throws:

  SpimDataException

• mergeHdf5ViewsTimepoints

  public static void mergeHdf5ViewsTimepoints(List<String> inputFilenames,
                                              String outputXmlFilename)
                                       throws SpimDataException

  Append multiple HDF5 datasets, where each dataset contains the same setups but different timepoints.

  Parameters:

  inputFilenames - xml file names for input datasets

  outputXmlFilename - xml filename into which to store the merged dataset. An HDF5 link master file with the same basename and extension ".h5" will be created that links into the source hdf5s.

  Throws:

  SpimDataException