Field Detail

• myURL

  protected static final String myURL

  See Also:

  Constant Field Values

• paperURL

  protected static final String paperURL

  See Also:

  Constant Field Values

• defaultImg

  public static int defaultImg

• defaultReApply

  public static boolean defaultReApply

• lastModels

  public static ArrayList<InvertibleBoundable> lastModels

• lastDimensionality

  public static int lastDimensionality

• offset

  public static float[] offset

• oneModelPerChannel

  public static boolean oneModelPerChannel

• transformationModels2d

  public String[] transformationModels2d

• transformationModels3d

  public String[] transformationModels3d

• localizationChoice

  public static String[] localizationChoice

• defaultTransformationModel

  public static int defaultTransformationModel

• defaultLocalization

  public static int defaultLocalization

• defaultRegularizationTransformationModel

  public static int defaultRegularizationTransformationModel

• defaultLambda

  public static double defaultLambda

• defaultFixFirstTile

  public static boolean defaultFixFirstTile

• defaultRegularize

  public static boolean defaultRegularize

• detectionBrightness

  public static String[] detectionBrightness

• defaultDetectionBrightness

  public static int defaultDetectionBrightness

• defaultSigma

  public static double defaultSigma

• defaultThreshold

  public static double defaultThreshold

• detectionSize

  public static String[] detectionSize

• defaultDetectionSize

  public static int defaultDetectionSize

• detectionTypes

  public static String[] detectionTypes

• defaultDetectionType

  public static int defaultDetectionType

• defaultSimilarOrientation

  public static boolean defaultSimilarOrientation

• defaultNumNeighbors

  public static int defaultNumNeighbors

• defaultRedundancy

  public static int defaultRedundancy

• defaultSignificance

  public static double defaultSignificance

• defaultRansacThreshold

  public static double defaultRansacThreshold

• globalOptTypes

  public static String[] globalOptTypes

• defaultGlobalOpt

  public static int defaultGlobalOpt

• defaultRange

  public static int defaultRange

• defaultChannel

  public static int defaultChannel

• resultChoices

  public static String[] resultChoices

• defaultResult

  public static int defaultResult

• interpolationChoices

  public static String[] interpolationChoices

• defaultInterpolation

  public static int defaultInterpolation

• defaultDirectory

  public static String defaultDirectory

• defaultSigmaX

  public static double defaultSigmaX

• defaultSigmaY

  public static double defaultSigmaY

• defaultSigmaZ

  public static double defaultSigmaZ

• defaultSupportX

  public static int defaultSupportX

• defaultSupportY

  public static int defaultSupportY

• defaultSupportZ

  public static int defaultSupportZ

• defaultIterations

  public static int defaultIterations

Constructor Detail

• Descriptor_based_series_registration

  public Descriptor_based_series_registration()

Method Detail

• run

  public void run(String arg0)

  Specified by:

  run in interface ij.plugin.PlugIn

• getParameters

  protected DescriptorParameters getParameters(ij.ImagePlus imp,
                                               int dimensionality)

  Ask for all other required parameters ..

  Parameters:

  dimensionality -

• getGaussianParameters

  public static boolean getGaussianParameters(int dimensionality,
                                              DescriptorParameters params)