@Deprecated public class FusionImageLoader<T extends RealType<T>> extends Object implements ImgLoader
ImgLoader loads images that represent a 3D stack as a sequence
of slice with one image file per slice, such as created by Stephan
Preibisch's Multi-view fusion plugin. It is constructed with the pattern of
the image filenames. Then, to laod the image for a given
ViewDescription, its TODO timepoint? index?, channel, and slice
indices are filled into the template to get the slice filenames.
This ImgLoader is used for exporting spim sequences to hdf5. Only the
BasicSetupImgLoader.getImage(int, ImgLoaderHint...) method is
implemented because this is the only method required for exporting to hdf5.| Modifier and Type | Class and Description |
|---|---|
static class |
FusionImageLoader.ArrayImgLoader<T extends RealType<T> & NativeType<T>>
Deprecated.
|
static class |
FusionImageLoader.Gray16ImagePlusLoader
Deprecated.
|
static class |
FusionImageLoader.Gray32ImagePlusLoader
Deprecated.
|
static class |
FusionImageLoader.Gray8ImagePlusLoader
Deprecated.
|
class |
FusionImageLoader.SetupLoader
Deprecated.
|
static interface |
FusionImageLoader.SliceLoader<T>
Deprecated.
|
| Constructor and Description |
|---|
FusionImageLoader(String pattern,
HashMap<Integer,Integer> setupIdToChannelId,
int numSlices,
FusionImageLoader.SliceLoader<T> sliceLoader,
double sliceValueMin,
double sliceValueMax)
Deprecated.
|
FusionImageLoader(String pattern,
HashMap<Integer,Integer> setupIdToChannelId,
int numSlices,
FusionImageLoader.SliceLoader<T> sliceLoader,
double sliceValueMin,
double sliceValueMax,
ImgFactory<UnsignedShortType> factory)
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
FusionImageLoader.SetupLoader |
getSetupImgLoader(int setupId)
Deprecated.
Get the
SetupImgLoader for the specified view setup. |
public FusionImageLoader(String pattern, HashMap<Integer,Integer> setupIdToChannelId, int numSlices, FusionImageLoader.SliceLoader<T> sliceLoader, double sliceValueMin, double sliceValueMax)
public FusionImageLoader(String pattern, HashMap<Integer,Integer> setupIdToChannelId, int numSlices, FusionImageLoader.SliceLoader<T> sliceLoader, double sliceValueMin, double sliceValueMax, ImgFactory<UnsignedShortType> factory)
public FusionImageLoader.SetupLoader getSetupImgLoader(int setupId)
ImgLoaderSetupImgLoader for the specified view setup.getSetupImgLoader in interface BasicImgLoadergetSetupImgLoader in interface ImgLoadersetupId - view setup for which to get the SetupImgLoader.SetupImgLoader for the specified view setup.Copyright © 2015–2021 Fiji. All rights reserved.