SlideBook6 (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- spim.fiji.datasetmanager.SlideBook6

All Implemented Interfaces:: MultiViewDatasetDefinition

public class SlideBook6
extends Object
implements MultiViewDatasetDefinition

Field Summary

Fields
Modifier and Type	Field and Description
`static double[]`	`defaultAngles`
`static float[]`	`defaultCalibrations`
`static int`	`defaultCapture`
`static String`	`defaultFilePath`
`static boolean`	`defaultModifyCal`
`static String[]`	`rotAxes`

Constructor Summary

Constructors
Constructor and Description

SlideBook6()

Constructors
Constructor and Description
`SlideBook6()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`static void`	`applyAxis(SpimData data, double minResolution)`
`SpimData2`	`createDataset()` This method is supposed to (interactively, ideally ImageJ-macroscriptable) query all necessary data from the user to build up a SpimData object and save it as an XML file.
`protected TimePoints`	`createTimePoints(SlideBook6MetaData meta)` Creates the `TimePoints` for the `SpimData` object
`protected ArrayList<ViewSetup>`	`createViewSetups(SlideBook6MetaData meta)` Creates the List of `ViewSetup` for the `SpimData` object.
`String`	`getExtendedDescription()` An explanation for the user what exactly this `MultiViewDatasetDefinition` supports and how it needs to be stored.
`String`	`getTitle()` Defines the title under which it will be displayed in the list of available multi-view dataset definitions
`static void`	`main(String[] args)`
`SlideBook6`	`newInstance()`
`protected File`	`querySLDFile()`
`protected ImgFactory<? extends NativeType<?>>`	`selectImgFactory(SlideBook6MetaData meta)`
`protected boolean`	`showDialogs(SlideBook6MetaData meta)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - rotAxes
```
public static String[] rotAxes
```
  - defaultFilePath
```
public static String defaultFilePath
```
  - defaultModifyCal
```
public static boolean defaultModifyCal
```
  - defaultCapture
```
public static int defaultCapture
```
  - defaultAngles
```
public static double[] defaultAngles
```
  - defaultCalibrations
```
public static float[] defaultCalibrations
```
- Constructor Detail
  - SlideBook6
```
public SlideBook6()
```
- Method Detail
  - getTitle
```
public String getTitle()
```
    Description copied from interface: MultiViewDatasetDefinition
    
    Defines the title under which it will be displayed in the list of available multi-view dataset definitions
    
    Specified by:
    
    getTitle in interface MultiViewDatasetDefinition
    
    Returns:
  - getExtendedDescription
```
public String getExtendedDescription()
```
    Description copied from interface: MultiViewDatasetDefinition
    
    An explanation for the user what exactly this MultiViewDatasetDefinition supports and how it needs to be stored. Up to 15 lines will be displayed with 80 characters each. No newline characters are allowed.
    
    Specified by:
    
    getExtendedDescription in interface MultiViewDatasetDefinition
    
    Returns:
    
    description
  - createDataset
```
public SpimData2 createDataset()
```
    Description copied from interface: MultiViewDatasetDefinition
    
    This method is supposed to (interactively, ideally ImageJ-macroscriptable) query all necessary data from the user to build up a SpimData object and save it as an XML file.
    
    Specified by:
    
    createDataset in interface MultiViewDatasetDefinition
    
    Returns:
    
    - the saved SpimData object
  - applyAxis
```
public static void applyAxis(SpimData data,
                             double minResolution)
```
  - createViewSetups
```
protected ArrayList<ViewSetup> createViewSetups(SlideBook6MetaData meta)
```
    Creates the List of ViewSetup for the SpimData object. The ViewSetup are defined independent of the TimePoint, each TimePoint should have the same ViewSetups. The MissingViews class defines if some of them are missing for some of the TimePoints
    
    Returns:
  - createTimePoints
```
protected TimePoints createTimePoints(SlideBook6MetaData meta)
```
    Creates the TimePoints for the SpimData object
  - selectImgFactory
```
protected ImgFactory<? extends NativeType<?>> selectImgFactory(SlideBook6MetaData meta)
```
  - showDialogs
```
protected boolean showDialogs(SlideBook6MetaData meta)
```
  - querySLDFile
```
protected File querySLDFile()
```
  - newInstance
```
public SlideBook6 newInstance()
```
    Specified by:
    
    newInstance in interface MultiViewDatasetDefinition
    
    Returns:
    
    - a new instance of this implementation
  - main
```
public static void main(String[] args)
```

Class SlideBook6

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

rotAxes

defaultFilePath

defaultModifyCal

defaultCapture

defaultAngles

defaultCalibrations

Constructor Detail

SlideBook6

Method Detail

getTitle

getExtendedDescription

createDataset

applyAxis

createViewSetups

createTimePoints

selectImgFactory

showDialogs

querySLDFile

newInstance

main