MicroManager (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- spim.fiji.datasetmanager.MicroManager

All Implemented Interfaces:: MultiViewDatasetDefinition

public class MicroManager
extends Object
implements MultiViewDatasetDefinition

Field Summary

Fields
Modifier and Type	Field and Description
`static boolean`	`defaultApplyRotAxis`
`static String`	`defaultFirstFile`
`static boolean`	`defaultModifyCal`
`static boolean`	`defaultRotAxis`
`static String[]`	`rotAxes`

Constructor Summary

Constructors
Constructor and Description

MicroManager()

Constructors
Constructor and Description
`MicroManager()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`SpimData2`	`createDataset()` This method is supposed to (interactively, ideally ImageJ-macroscriptable) query all necessary data from the user to build up a SpimData object and save it as an XML file.
`protected TimePoints`	`createTimePoints(MultipageTiffReader meta)` Creates the `TimePoints` for the `SpimData` object
`protected ArrayList<ViewSetup>`	`createViewSetups(MultipageTiffReader meta)` Creates the List of `ViewSetup` for the `SpimData` object.
`String`	`getExtendedDescription()` An explanation for the user what exactly this `MultiViewDatasetDefinition` supports and how it needs to be stored.
`String`	`getTitle()` Defines the title under which it will be displayed in the list of available multi-view dataset definitions
`static void`	`main(String[] args)`
`MicroManager`	`newInstance()`
`protected File`	`queryMMFile()`
`protected boolean`	`showDialogs(MultipageTiffReader meta)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - rotAxes
```
public static String[] rotAxes
```
  - defaultFirstFile
```
public static String defaultFirstFile
```
  - defaultModifyCal
```
public static boolean defaultModifyCal
```
  - defaultRotAxis
```
public static boolean defaultRotAxis
```
  - defaultApplyRotAxis
```
public static boolean defaultApplyRotAxis
```
- Constructor Detail
  - MicroManager
```
public MicroManager()
```
- Method Detail
  - getTitle
```
public String getTitle()
```
    Description copied from interface: MultiViewDatasetDefinition
    
    Defines the title under which it will be displayed in the list of available multi-view dataset definitions
    
    Specified by:
    
    getTitle in interface MultiViewDatasetDefinition
    
    Returns:
  - getExtendedDescription
```
public String getExtendedDescription()
```
    Description copied from interface: MultiViewDatasetDefinition
    
    An explanation for the user what exactly this MultiViewDatasetDefinition supports and how it needs to be stored. Up to 15 lines will be displayed with 80 characters each. No newline characters are allowed.
    
    Specified by:
    
    getExtendedDescription in interface MultiViewDatasetDefinition
    
    Returns:
    
    description
  - createDataset
```
public SpimData2 createDataset()
```
    Description copied from interface: MultiViewDatasetDefinition
    
    This method is supposed to (interactively, ideally ImageJ-macroscriptable) query all necessary data from the user to build up a SpimData object and save it as an XML file.
    
    Specified by:
    
    createDataset in interface MultiViewDatasetDefinition
    
    Returns:
    
    - the saved SpimData object
  - createViewSetups
```
protected ArrayList<ViewSetup> createViewSetups(MultipageTiffReader meta)
```
    Creates the List of ViewSetup for the SpimData object. The ViewSetup are defined independent of the TimePoint, each TimePoint should have the same ViewSetups. The MissingViews class defines if some of them are missing for some of the TimePoints
    
    Returns:
  - createTimePoints
```
protected TimePoints createTimePoints(MultipageTiffReader meta)
```
    Creates the TimePoints for the SpimData object
  - showDialogs
```
protected boolean showDialogs(MultipageTiffReader meta)
```
  - queryMMFile
```
protected File queryMMFile()
```
  - newInstance
```
public MicroManager newInstance()
```
    Specified by:
    
    newInstance in interface MultiViewDatasetDefinition
    
    Returns:
    
    - a new instance of this implementation
  - main
```
public static void main(String[] args)
```

Class MicroManager

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

rotAxes

defaultFirstFile

defaultModifyCal

defaultRotAxis

defaultApplyRotAxis

Constructor Detail

MicroManager

Method Detail

getTitle

getExtendedDescription

createDataset

createViewSetups

createTimePoints

showDialogs

queryMMFile

newInstance

main