Field Detail

• interpolationTypes

  public static String[] interpolationTypes

• defaultInterpolation

  public static int defaultInterpolation

• interpolation

  protected int interpolation

• defaultUseBlending

  public static boolean defaultUseBlending

• useBlending

  protected boolean useBlending

• defaultUseContentBased

  public static boolean defaultUseContentBased

• useContentBased

  protected boolean useContentBased

• newViewsetups

  protected Map<ViewSetup,ViewSetup> newViewsetups

  Maps from an old Viewsetup to a new ViewSetup that is created by the fusion

• viewIdsToProcess

  protected final List<ViewId> viewIdsToProcess

  which ViewId to process, set in queryParameters

• timepointsToProcess

  protected final List<TimePoint> timepointsToProcess

• channelsToProcess

  protected final List<Channel> channelsToProcess

• spimData

  protected final SpimData2 spimData

• avgPixels

  protected final long avgPixels

Constructor Detail

• Fusion

  public Fusion(SpimData2 spimData,
                List<ViewId> viewIdsToProcess)

  Parameters:

  spimData -

  viewIdsToProcess - - which viewIds to fuse

Method Detail

• totalRAM

  public abstract long totalRAM(long fusedSizeMB,
                                int bytePerPixel)

• getMaxNumViewsPerTimepoint

  public int getMaxNumViewsPerTimepoint()

• getInterpolation

  public int getInterpolation()

• fuseData

  public abstract boolean fuseData(BoundingBoxGUI bb,
                                   ImgExport exporter)

  Fuses and saves/displays

  Parameters:

  bb -

  Returns:

• getTimepointsToProcess

  public List<TimePoint> getTimepointsToProcess()

  Returns:

  - which timepoints will be processed, this is maybe inquired by the exporter if it needs to assemble a new XML dataset or append to the current XML dataset

• getNewViewSetups

  public List<ViewSetup> getNewViewSetups()

  Returns:

  - a sorted List of ViewSetup(s) that are created by this fusion, this maybe requested if the exporter creates a new XML dataset or appends to an existing XML dataset

• createNewViewSetups

  protected abstract Map<ViewSetup,ViewSetup> createNewViewSetups(BoundingBoxGUI bb)

  Set up the list of new viewsetups that are created with this fusion. This maybe required if the exporter needs to assemble a new XML dataset or append to the current XML dataset. It maps from an old ViewSetup to a new ViewSetup

  Parameters:

  bb - - the bounding box used for fusing the data

  Returns:

  the list of new viewsetups (in the order as the viewsetups are processed)

• defineNewViewSetups

  public void defineNewViewSetups(BoundingBoxGUI bb)

• supports16BitUnsigned

  public abstract boolean supports16BitUnsigned()

• supportsDownsampling

  public abstract boolean supportsDownsampling()

• compressBoundingBoxDialog

  public abstract boolean compressBoundingBoxDialog()

  compress the bounding box dialog as much as possible to let more space for extra parameters

  Returns:

• queryParameters

  public abstract boolean queryParameters()

  Query the necessary parameters for the fusion (new dialog has to be made)

  Returns:

• queryAdditionalParameters

  public abstract void queryAdditionalParameters(GenericDialog gd)

  Query additional parameters within the bounding box dialog

• registerAdditionalListeners

  public void registerAdditionalListeners(BoundingBoxGUI.ManageListeners m)

  In case there are some other Listener upon whom the memory needs to be recomputed in the Manual Bounding Box.

  Parameters:

  m -

• parseAdditionalParameters

  public abstract boolean parseAdditionalParameters(GenericDialog gd)

  Parse the additional parameters added before within the bounding box dialog

  Parameters:

  gd -

  Returns:

• newInstance

  public abstract Fusion newInstance(SpimData2 spimData,
                                     List<ViewId> viewIdsToProcess)

  Parameters:

  spimData -

  viewIdsToProcess- - which viewIds to fuse

  Returns:

  - a new instance without any special properties

• getDescription

  public abstract String getDescription()

  Returns:

  - to be displayed in the generic dialog

• computeAvgImageSize

  protected long computeAvgImageSize()

• computeMaxNumViews

  protected int computeMaxNumViews()

  Returns:

  - max num views per fused image