All Classes
Packages
<unnamed package>
adapter
adt
ai
amira
anisotropic_diffusion
bdv
bdv.cache
bdv.export
bdv.export.n5
bdv.gui
bdv.ij
bdv.ij.export
bdv.ij.export.imgloader
bdv.ij.export.tiles
bdv.ij.util
bdv.img
bdv.img.cache
bdv.img.catmaid
bdv.img.hdf5
bdv.img.imagestack
bdv.img.imaris
bdv.img.n5
bdv.img.openconnectome
bdv.img.remote
bdv.img.virtualstack
bdv.spimdata
bdv.spimdata.legacy
bdv.spimdata.tools
bdv.tools
bdv.tools.bookmarks
bdv.tools.boundingbox
bdv.tools.brightness
bdv.tools.crop
bdv.tools.transformation
bdv.ui
bdv.ui.convertersetupeditor
bdv.ui.rangeslider
bdv.ui.sourcegrouptree
bdv.ui.sourcetable
bdv.ui.splitpanel
bdv.ui.viewermodepanel
bdv.util
bdv.util.volatiles
bdv.viewer
bdv.viewer.animate
bdv.viewer.overlay
bdv.viewer.render
bdv.viewer.render.awt
bdv.viewer.state
bigwarp
bigwarp.landmarks
bigwarp.landmarks.actions
bigwarp.loader
bigwarp.metadata
bigwarp.scripts
bigwarp.source
bigwarp.transforms
bigwarp.util
Bug_Submitter
bunwarpj
bunwarpj.trakem2.transform
client
color
customnode
customnode.u3d
delaunay
distance
edu.utexas.archipelago
edu.utexas.archipelago.image
edu.utexas.archipelago.plugin
edu.utexas.archipelago.segmentation
edu.utexas.clm.archipelago
edu.utexas.clm.archipelago.compute
edu.utexas.clm.archipelago.data
edu.utexas.clm.archipelago.example
edu.utexas.clm.archipelago.exception
edu.utexas.clm.archipelago.ijsupport
edu.utexas.clm.archipelago.ijsupport.bottle
edu.utexas.clm.archipelago.listen
edu.utexas.clm.archipelago.network
edu.utexas.clm.archipelago.network.client
edu.utexas.clm.archipelago.network.node
edu.utexas.clm.archipelago.network.server
edu.utexas.clm.archipelago.network.shell
edu.utexas.clm.archipelago.network.shell.ssh
edu.utexas.clm.archipelago.network.translation
edu.utexas.clm.archipelago.ui
edu.utexas.clm.archipelago.util
edu.utexas.clm.crop
edu.utexas.clm.reconstructreader
edu.utexas.clm.reconstructreader.reconstruct
edu.utexas.clm.reconstructreader.trakem2
emblcmci
events
features
fiji
fiji.analyze.directionality
fiji.color
fiji.debugging
fiji.denoise
fiji.drawing
fiji.expressionparser
fiji.expressionparser.function
fiji.features
fiji.geom
fiji.help
fiji.packaging
fiji.plugin
fiji.plugin.timelapsedisplay
fiji.plugin.trackmate
fiji.plugin.trackmate.action
fiji.plugin.trackmate.action.fit
fiji.plugin.trackmate.detection
fiji.plugin.trackmate.detection.semiauto
fiji.plugin.trackmate.detection.util
fiji.plugin.trackmate.features
fiji.plugin.trackmate.features.edges
fiji.plugin.trackmate.features.manual
fiji.plugin.trackmate.features.spot
fiji.plugin.trackmate.features.track
fiji.plugin.trackmate.graph
fiji.plugin.trackmate.gui
fiji.plugin.trackmate.gui.components
fiji.plugin.trackmate.gui.components.detector
fiji.plugin.trackmate.gui.components.tracker
fiji.plugin.trackmate.gui.displaysettings
fiji.plugin.trackmate.gui.wizard
fiji.plugin.trackmate.gui.wizard.descriptors
fiji.plugin.trackmate.io
fiji.plugin.trackmate.providers
fiji.plugin.trackmate.tracking
fiji.plugin.trackmate.tracking.kalman
fiji.plugin.trackmate.tracking.kdtree
fiji.plugin.trackmate.tracking.overlap
fiji.plugin.trackmate.tracking.sparselap
fiji.plugin.trackmate.tracking.sparselap.costfunction
fiji.plugin.trackmate.tracking.sparselap.costmatrix
fiji.plugin.trackmate.tracking.sparselap.linker
fiji.plugin.trackmate.util
fiji.plugin.trackmate.visualization
fiji.plugin.trackmate.visualization.hyperstack
fiji.plugin.trackmate.visualization.table
fiji.plugin.trackmate.visualization.trackscheme
fiji.plugin.trackmate.visualization.trackscheme.utils
fiji.plugin.volumeviewer
fiji.process
fiji.process3d
fiji.scripting
fiji.selection
fiji.stacks
fiji.statistics
fiji.threshold
fiji.tool
fiji.util
fiji.util.gui
fiji.util.node
fsalign
graphcut
gui
histogram2
hr.irb.fastRandomForest
ij.gui
ij3d
ij3d.behaviors
ij3d.contextmenu
ij3d.gui
ij3d.pointlist
ij3d.segmentation
ij3d.shapes
ij3d.shortcuts
imglib.ops.condition
imglib.ops.function
imglib.ops.function.p1
imglib.ops.function.p2
imglib.ops.function.pn
imglib.ops.observer
imglib.ops.operation
imglib.ops.operator
imglib.ops.operator.binary
imglib.ops.operator.unary
inference
ini.trakem2
ini.trakem2.analysis
ini.trakem2.display
ini.trakem2.display.d3d
ini.trakem2.display.graphics
ini.trakem2.display.inspect
ini.trakem2.display.paint
ini.trakem2.imaging
ini.trakem2.imaging.filters
ini.trakem2.io
ini.trakem2.parallel
ini.trakem2.persistence
ini.trakem2.plugin
ini.trakem2.scripting
ini.trakem2.tree
ini.trakem2.utils
ini.trakem2.vector
isosurface
jitk.spline
jRenderer3D
landmarks
leica
lenscorrection
levelsets.algorithm
levelsets.filter
levelsets.ij
lineage
loci.plugins
loci.plugins.config
loci.plugins.in
loci.plugins.macro
loci.plugins.out
loci.plugins.prefs
loci.plugins.shortcut
loci.plugins.util
marchingcubes
math
math3d
mmorpho
mpi.fruitfly.general
mpi.fruitfly.math
mpi.fruitfly.math.datastructures
mpi.fruitfly.registration
mpicbg.icp
mpicbg.ij
mpicbg.ij.blockmatching
mpicbg.ij.clahe
mpicbg.ij.integral
mpicbg.ij.plugin
mpicbg.ij.stack
mpicbg.ij.util
mpicbg.ij.visualization
mpicbg.imagefeatures
mpicbg.imglib
mpicbg.imglib.algorithm
mpicbg.imglib.algorithm.correlation
mpicbg.imglib.algorithm.extremafinder
mpicbg.imglib.algorithm.fft
mpicbg.imglib.algorithm.floydsteinberg
mpicbg.imglib.algorithm.function
mpicbg.imglib.algorithm.gauss
mpicbg.imglib.algorithm.histogram
mpicbg.imglib.algorithm.histogram.arbitrary
mpicbg.imglib.algorithm.histogram.discrete
mpicbg.imglib.algorithm.integral
mpicbg.imglib.algorithm.kdtree
mpicbg.imglib.algorithm.kdtree.node
mpicbg.imglib.algorithm.labeling
mpicbg.imglib.algorithm.math
mpicbg.imglib.algorithm.mirror
mpicbg.imglib.algorithm.pde
mpicbg.imglib.algorithm.peak
mpicbg.imglib.algorithm.projection
mpicbg.imglib.algorithm.roi
mpicbg.imglib.algorithm.scalespace
mpicbg.imglib.algorithm.transformation
mpicbg.imglib.container
mpicbg.imglib.container.array
mpicbg.imglib.container.basictypecontainer
mpicbg.imglib.container.basictypecontainer.array
mpicbg.imglib.container.cell
mpicbg.imglib.container.constant
mpicbg.imglib.container.dynamic
mpicbg.imglib.container.imageplus
mpicbg.imglib.container.planar
mpicbg.imglib.container.shapelist
mpicbg.imglib.cursor
mpicbg.imglib.cursor.array
mpicbg.imglib.cursor.cell
mpicbg.imglib.cursor.constant
mpicbg.imglib.cursor.dynamic
mpicbg.imglib.cursor.imageplus
mpicbg.imglib.cursor.link
mpicbg.imglib.cursor.planar
mpicbg.imglib.cursor.shapelist
mpicbg.imglib.cursor.special
mpicbg.imglib.cursor.vector
mpicbg.imglib.exception
mpicbg.imglib.function
mpicbg.imglib.image
mpicbg.imglib.image.display
mpicbg.imglib.image.display.imagej
mpicbg.imglib.interpolation
mpicbg.imglib.interpolation.dct
mpicbg.imglib.interpolation.lanczos
mpicbg.imglib.interpolation.linear
mpicbg.imglib.interpolation.nearestneighbor
mpicbg.imglib.io
mpicbg.imglib.labeling
mpicbg.imglib.multithreading
mpicbg.imglib.outofbounds
mpicbg.imglib.type
mpicbg.imglib.type.label
mpicbg.imglib.type.logic
mpicbg.imglib.type.numeric
mpicbg.imglib.type.numeric.complex
mpicbg.imglib.type.numeric.integer
mpicbg.imglib.type.numeric.real
mpicbg.imglib.util
mpicbg.imglib.wrapper
mpicbg.models
mpicbg.panorama
mpicbg.pointdescriptor
mpicbg.pointdescriptor.exception
mpicbg.pointdescriptor.matcher
mpicbg.pointdescriptor.model
mpicbg.pointdescriptor.similarity
mpicbg.pointdescriptor.test
mpicbg.spim
mpicbg.spim.data
mpicbg.spim.data.generic
mpicbg.spim.data.generic.base
mpicbg.spim.data.generic.sequence
mpicbg.spim.data.legacy
mpicbg.spim.data.registration
mpicbg.spim.data.sequence
mpicbg.spim.fusion
mpicbg.spim.fusion.entropy
mpicbg.spim.io
mpicbg.spim.mpicbg
mpicbg.spim.postprocessing.deconvolution
mpicbg.spim.postprocessing.deconvolution2
mpicbg.spim.preprocessing
mpicbg.spim.registration
mpicbg.spim.registration.bead
mpicbg.spim.registration.bead.error
mpicbg.spim.registration.bead.laplace
mpicbg.spim.registration.detection
mpicbg.spim.registration.detection.descriptor
mpicbg.spim.registration.segmentation
mpicbg.spim.registration.threshold
mpicbg.spim.segmentation
mpicbg.spim.simulation
mpicbg.spim.vis3d
mpicbg.stitching
mpicbg.stitching.fusion
mpicbg.trakem2.align
mpicbg.trakem2.align.concurrent
mpicbg.trakem2.transform
mpicbg.trakem2.util
mpicbg.util
net.imagej.ui.swing.ops
net.imglib2
net.imglib2.algorithm.math
net.imglib2.display
net.imglib2.iterator
net.imglib2.predicate
net.imglib2.realtransform
nrrd
octree
oldsegmenters
org.imagearchive.lsm.reader
org.imagearchive.lsm.reader.info
org.imagearchive.lsm.toolbox
org.imagearchive.lsm.toolbox.gui
org.imagearchive.lsm.toolbox.info
org.imagearchive.lsm.toolbox.info.scaninfo
org.janelia.intensity
org.janelia.it.fiji.plugins.h5j
org.janelia.it.h5j.fiji.adapter
org.janelia.it.jacs.shared.ffmpeg
org.janelia.thickness
org.janelia.thickness.inference
org.janelia.thickness.inference.fits
org.janelia.thickness.inference.visitor
org.janelia.thickness.lut
org.janelia.thickness.plugin
org.janelia.thickness.trakem2
org.janelia.utility
org.janelia.utility.arrays
org.janelia.utility.parse
org.janelia.utility.ui
org.janelia.vaa3d.reader
org.siox
org.siox.example
org.siox.util
orthoslice
pal.math
plugin
process
process3d
QuickPALM
register_virtual_stack
registration3d
sc.fiji.analyzeSkeleton
sc.fiji.analyzeSkeleton.ita
sc.fiji.balloonSegmentation
sc.fiji.balloonSegmentation.structure
sc.fiji.balloonSegmentation.utils
sc.fiji.cellCounter
sc.fiji.coloc
sc.fiji.coloc.algorithms
sc.fiji.coloc.gadgets
sc.fiji.coloc.results
sc.fiji.colourDeconvolution
sc.fiji.hdf5
sc.fiji.i5d
sc.fiji.i5d.cal
sc.fiji.i5d.gui
sc.fiji.i5d.plugin
sc.fiji.i5d.util
sc.fiji.io
sc.fiji.io.icns
sc.fiji.localThickness
sc.fiji.multiKymograph
sc.fiji.omevisual
sc.fiji.omevisual.gui
sc.fiji.omevisual.gui.model
sc.fiji.omevisual.gui.view
sc.fiji.skeletonize3D
sc.fiji.snt
sc.fiji.snt.analysis
sc.fiji.snt.analysis.graph
sc.fiji.snt.analysis.sholl
sc.fiji.snt.analysis.sholl.gui
sc.fiji.snt.analysis.sholl.math
sc.fiji.snt.analysis.sholl.parsers
sc.fiji.snt.annotation
sc.fiji.snt.event
sc.fiji.snt.filter
sc.fiji.snt.gui
sc.fiji.snt.gui.cmds
sc.fiji.snt.hyperpanes
sc.fiji.snt.io
sc.fiji.snt.plugin
sc.fiji.snt.plugin.ij1
sc.fiji.snt.tracing
sc.fiji.snt.tracing.artist
sc.fiji.snt.tracing.cost
sc.fiji.snt.tracing.heuristic
sc.fiji.snt.tracing.image
sc.fiji.snt.util
sc.fiji.snt.viewer
sc.fiji.snt.viewer.geditor
sc.fiji.timelapse
script.imglib
script.imglib.algorithm
script.imglib.algorithm.fn
script.imglib.analysis
script.imglib.color
script.imglib.color.fn
script.imglib.math
script.imglib.math.fn
selection
siox
spim
spim.fiji.datasetmanager
spim.fiji.plugin
spim.fiji.plugin.apply
spim.fiji.plugin.cluster
spim.fiji.plugin.fusion
spim.fiji.plugin.interestpointdetection
spim.fiji.plugin.interestpointregistration
spim.fiji.plugin.queryXML
spim.fiji.plugin.removedetections
spim.fiji.plugin.resave
spim.fiji.plugin.thinout
spim.fiji.plugin.util
spim.fiji.spimdata
spim.fiji.spimdata.boundingbox
spim.fiji.spimdata.explorer
spim.fiji.spimdata.explorer.interestpoint
spim.fiji.spimdata.explorer.popup
spim.fiji.spimdata.explorer.registration
spim.fiji.spimdata.explorer.util
spim.fiji.spimdata.imgloaders
spim.fiji.spimdata.interestpoints
spim.process.cuda
spim.process.fusion
spim.process.fusion.boundingbox
spim.process.fusion.boundingbox.automatic
spim.process.fusion.deconvolution
spim.process.fusion.export
spim.process.fusion.weightedavg
spim.process.fusion.weights
spim.process.interestpointdetection
spim.process.interestpointregistration
spim.process.interestpointregistration.centerofmass
spim.process.interestpointregistration.geometricdescriptor
spim.process.interestpointregistration.geometrichashing
spim.process.interestpointregistration.icp
spim.process.interestpointregistration.optimizationtypes
spim.process.interestpointregistration.registrationstatistics
spim.vecmath
spimopener
SplineDeformationGenerator
stacks
stitching
stitching.model
stitching.utils
surfaceplot
textureByRef
tools
trainableSegmentation
trainableSegmentation.filters
trainableSegmentation.metrics
trainableSegmentation.unsupervised
trainableSegmentation.utils
treeline
util
util.opencsv
Utilities
vib
vib.app
vib.app.gui
vib.app.module
vib.edge
vib.oldregistration
vib.segment
vib.transforms
video
video2
view4d
view5d
voltex
volumeCalculator