Hierarchy For All Packages

Package Hierarchies:

• inra.ijpb.algo,
• inra.ijpb.binary,
• inra.ijpb.binary.conncomp,
• inra.ijpb.binary.distmap,
• inra.ijpb.binary.geodesic,
• inra.ijpb.binary.skeleton,
• inra.ijpb.color,
• inra.ijpb.data,
• inra.ijpb.data.border,
• inra.ijpb.data.image,
• inra.ijpb.geometry,
• inra.ijpb.label,
• inra.ijpb.label.conncomp,
• inra.ijpb.label.distmap,
• inra.ijpb.label.edit,
• inra.ijpb.label.filter,
• inra.ijpb.label.select,
• inra.ijpb.math,
• inra.ijpb.measure,
• inra.ijpb.measure.region2d,
• inra.ijpb.measure.region3d,
• inra.ijpb.morphology,
• inra.ijpb.morphology.attrfilt,
• inra.ijpb.morphology.directional,
• inra.ijpb.morphology.extrema,
• inra.ijpb.morphology.filter,
• inra.ijpb.morphology.geodrec,
• inra.ijpb.morphology.strel,
• inra.ijpb.plugins,
• inra.ijpb.segment,
• inra.ijpb.shape,
• inra.ijpb.util,
• inra.ijpb.watershed

Class Hierarchy

• java.lang.Object
  • inra.ijpb.algo.AlgoEvent
  • inra.ijpb.algo.AlgoStub (implements inra.ijpb.algo.Algo)
    • inra.ijpb.morphology.strel.AbstractStrel3D (implements inra.ijpb.morphology.Strel3D)
      • inra.ijpb.morphology.strel.AbstractInPlaceStrel3D (implements inra.ijpb.morphology.strel.InPlaceStrel3D)
        • inra.ijpb.morphology.strel.LinearDepthStrel3D
      • inra.ijpb.morphology.strel.AbstractSeparableStrel3D (implements inra.ijpb.algo.AlgoListener, inra.ijpb.morphology.strel.SeparableStrel3D)
        • inra.ijpb.morphology.strel.CubeStrel
        • inra.ijpb.morphology.strel.CuboidStrel
      • inra.ijpb.morphology.strel.AbstractStrel (implements inra.ijpb.morphology.Strel)
        • inra.ijpb.morphology.strel.AbstractInPlaceStrel (implements inra.ijpb.morphology.strel.InPlaceStrel)
          • inra.ijpb.morphology.strel.Cross3x3Strel
          • inra.ijpb.morphology.strel.DiskStrel (implements inra.ijpb.morphology.strel.InPlaceStrel)
          • inra.ijpb.morphology.strel.LinearDiagDownStrel
          • inra.ijpb.morphology.strel.LinearDiagUpStrel
          • inra.ijpb.morphology.strel.LinearHorizontalStrel
          • inra.ijpb.morphology.strel.LinearVerticalStrel
        • inra.ijpb.morphology.strel.AbstractSeparableStrel (implements inra.ijpb.algo.AlgoListener, inra.ijpb.morphology.strel.SeparableStrel)
          • inra.ijpb.morphology.strel.DiamondStrel
          • inra.ijpb.morphology.strel.OctagonStrel
          • inra.ijpb.morphology.strel.SquareStrel
        • inra.ijpb.morphology.strel.ChamferStrel
        • inra.ijpb.morphology.directional.OrientedLineStrel (implements inra.ijpb.morphology.Strel)
      • inra.ijpb.morphology.strel.BallStrel
      • inra.ijpb.morphology.strel.ChamferStrel3D
      • inra.ijpb.morphology.strel.Cross3DStrel
      • inra.ijpb.morphology.strel.EllipsoidStrel
      • inra.ijpb.morphology.strel.ExtrudedStrel
    • inra.ijpb.morphology.attrfilt.AreaOpeningNaive (implements inra.ijpb.morphology.attrfilt.AreaOpening)
    • inra.ijpb.morphology.attrfilt.AreaOpeningQueue (implements inra.ijpb.morphology.attrfilt.AreaOpening)
    • inra.ijpb.measure.region2d.BinaryConfigurationsHistogram2D
    • inra.ijpb.measure.region3d.BinaryConfigurationsHistogram3D
    • inra.ijpb.color.BinaryOverlay
    • inra.ijpb.morphology.attrfilt.BoxDiagonalOpeningQueue (implements inra.ijpb.morphology.attrfilt.AreaOpening)
    • inra.ijpb.binary.distmap.ChamferDistanceTransform2DFloat (implements inra.ijpb.binary.distmap.ChamferDistanceTransform2D)
    • inra.ijpb.label.distmap.ChamferDistanceTransform2DFloat (implements inra.ijpb.label.distmap.ChamferDistanceTransform2D)
    • inra.ijpb.binary.distmap.ChamferDistanceTransform2DShort (implements inra.ijpb.binary.distmap.ChamferDistanceTransform2D)
    • inra.ijpb.label.distmap.ChamferDistanceTransform2DShort (implements inra.ijpb.label.distmap.ChamferDistanceTransform2D)
    • inra.ijpb.binary.distmap.ChamferDistanceTransform3DFloat (implements inra.ijpb.binary.distmap.ChamferDistanceTransform3D)
    • inra.ijpb.label.distmap.ChamferDistanceTransform3DFloat (implements inra.ijpb.label.distmap.DistanceTransform3D)
    • inra.ijpb.binary.distmap.ChamferDistanceTransform3DShort (implements inra.ijpb.binary.distmap.ChamferDistanceTransform3D)
    • inra.ijpb.label.distmap.ChamferDistanceTransform3DShort (implements inra.ijpb.label.distmap.DistanceTransform3D)
    • inra.ijpb.label.filter.ChamferLabelDilation2DShort
    • inra.ijpb.label.filter.ChamferLabelDilation3DShort
    • inra.ijpb.label.filter.ChamferLabelErosion2DShort
    • inra.ijpb.label.filter.ChamferLabelErosion3DShort
    • inra.ijpb.morphology.directional.DirectionalFilter
    • inra.ijpb.binary.distmap.DistanceTransform3D4WeightsFloat (implements inra.ijpb.binary.distmap.DistanceTransform3D)
    • inra.ijpb.binary.distmap.DistanceTransform3D4WeightsShort (implements inra.ijpb.binary.distmap.DistanceTransform3D)
    • inra.ijpb.binary.distmap.DistanceTransform3DFloat (implements inra.ijpb.binary.distmap.DistanceTransform3D)
    • inra.ijpb.label.distmap.DistanceTransform3DFloat (implements inra.ijpb.label.distmap.DistanceTransform3D)
    • inra.ijpb.binary.distmap.DistanceTransform3DShort (implements inra.ijpb.binary.distmap.DistanceTransform3D)
    • inra.ijpb.label.distmap.DistanceTransform3DShort (implements inra.ijpb.label.distmap.DistanceTransform3D)
    • inra.ijpb.binary.distmap.DistanceTransform3x3Float (implements inra.ijpb.binary.distmap.DistanceTransform)
    • inra.ijpb.binary.distmap.DistanceTransform3x3Short (implements inra.ijpb.binary.distmap.DistanceTransform)
    • inra.ijpb.binary.distmap.DistanceTransform5x5Float (implements inra.ijpb.binary.distmap.DistanceTransform)
    • inra.ijpb.binary.distmap.DistanceTransform5x5Short (implements inra.ijpb.binary.distmap.DistanceTransform)
    • inra.ijpb.label.edit.FindAllLabels
    • inra.ijpb.binary.conncomp.FloodFillComponentsLabeling (implements inra.ijpb.binary.conncomp.ConnectedComponentsLabeling)
    • inra.ijpb.binary.conncomp.FloodFillComponentsLabeling3D (implements inra.ijpb.binary.conncomp.ConnectedComponentsLabeling3D)
    • inra.ijpb.label.conncomp.FloodFillRegionComponentsLabeling
    • inra.ijpb.label.conncomp.FloodFillRegionComponentsLabeling3D
    • inra.ijpb.binary.geodesic.GeodesicDiameter3DFloat (implements inra.ijpb.algo.AlgoListener, inra.ijpb.binary.geodesic.GeodesicDiameter3D)
    • inra.ijpb.binary.geodesic.GeodesicDiameterFloat (implements inra.ijpb.binary.geodesic.GeodesicDiameter)
    • inra.ijpb.binary.geodesic.GeodesicDiameterShort (implements inra.ijpb.binary.geodesic.GeodesicDiameter)
    • inra.ijpb.binary.geodesic.GeodesicDistanceTransform3DFloat (implements inra.ijpb.binary.geodesic.GeodesicDistanceTransform3D)
    • inra.ijpb.binary.geodesic.GeodesicDistanceTransformFloat (implements inra.ijpb.binary.geodesic.GeodesicDistanceTransform)
    • inra.ijpb.binary.geodesic.GeodesicDistanceTransformFloat5x5 (implements inra.ijpb.binary.geodesic.GeodesicDistanceTransform)
    • inra.ijpb.binary.geodesic.GeodesicDistanceTransformFloatHybrid (implements inra.ijpb.binary.geodesic.GeodesicDistanceTransform)
    • inra.ijpb.binary.geodesic.GeodesicDistanceTransformShort (implements inra.ijpb.binary.geodesic.GeodesicDistanceTransform)
    • inra.ijpb.binary.geodesic.GeodesicDistanceTransformShort5x5 (implements inra.ijpb.binary.geodesic.GeodesicDistanceTransform)
    • inra.ijpb.binary.geodesic.GeodesicDistanceTransformShortHybrid (implements inra.ijpb.binary.geodesic.GeodesicDistanceTransform)
    • inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub (implements inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgo)
      • inra.ijpb.morphology.geodrec.GeodesicReconstruction3DHybrid0Float
      • inra.ijpb.morphology.geodrec.GeodesicReconstruction3DHybrid0Gray16
      • inra.ijpb.morphology.geodrec.GeodesicReconstruction3DHybrid0Gray8
      • inra.ijpb.morphology.geodrec.GeodesicReconstruction3DHybrid1Image3D
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionByDilation3D
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionByDilation3DGray8
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionByDilation3DScanning
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionByDilation3DScanningGray8
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionByErosion3DGray8
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionByErosion3DScanning
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionByErosion3DScanningGray8
    • inra.ijpb.morphology.geodrec.GeodesicReconstructionAlgoStub (implements inra.ijpb.morphology.geodrec.GeodesicReconstructionAlgo)
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionByDilation
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionByErosion
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionHybrid
      • inra.ijpb.morphology.geodrec.GeodesicReconstructionScanning
    • inra.ijpb.binary.skeleton.ImageJSkeleton
    • inra.ijpb.label.conncomp.LabelBoundariesLabeling2D
    • inra.ijpb.label.conncomp.LabelBoundariesLabeling3D
    • inra.ijpb.label.distmap.LabelDilation2DShort
    • inra.ijpb.label.distmap.LabelDilation3D4WShort
    • inra.ijpb.label.distmap.LabelDilation3DShort
    • inra.ijpb.label.distmap.LabelDilationShort5x5
    • inra.ijpb.label.select.LabelSizeFiltering
    • inra.ijpb.morphology.filter.MorphologicalFilter (implements inra.ijpb.algo.AlgoListener)
      • inra.ijpb.morphology.filter.BlackTopHat
      • inra.ijpb.morphology.filter.Closing
      • inra.ijpb.morphology.filter.Dilation
      • inra.ijpb.morphology.filter.Erosion
      • inra.ijpb.morphology.filter.ExternalGradient
      • inra.ijpb.morphology.filter.Gradient
      • inra.ijpb.morphology.filter.InternalGradient
      • inra.ijpb.morphology.filter.Laplacian
      • inra.ijpb.morphology.filter.Opening
      • inra.ijpb.morphology.filter.WhiteTopHat
    • inra.ijpb.morphology.extrema.RegionalExtrema3DAlgo
      • inra.ijpb.morphology.extrema.RegionalExtrema3DByFlooding
    • inra.ijpb.measure.region2d.RegionAnalyzer2D<T> (implements inra.ijpb.measure.RegionAnalyzer<T>)
      • inra.ijpb.measure.region2d.AverageThickness
      • inra.ijpb.measure.region2d.BoundingBox
      • inra.ijpb.measure.region2d.Centroid
      • inra.ijpb.measure.region2d.Convexity
      • inra.ijpb.measure.region2d.EquivalentEllipse
      • inra.ijpb.measure.region2d.GeodesicDiameter
      • inra.ijpb.measure.region2d.InertiaEllipse
      • inra.ijpb.measure.region2d.IntrinsicVolumesAnalyzer2D (implements inra.ijpb.algo.AlgoListener)
      • inra.ijpb.measure.region2d.LargestInscribedCircle
      • inra.ijpb.measure.region2d.MaxFeretDiameter
      • inra.ijpb.measure.region2d.OrientedBoundingBox2D
    • inra.ijpb.measure.region3d.RegionAnalyzer3D<T> (implements inra.ijpb.algo.AlgoListener, inra.ijpb.measure.RegionAnalyzer<T>)
      • inra.ijpb.measure.region3d.BoundingBox3D
      • inra.ijpb.measure.region3d.Centroid3D
      • inra.ijpb.measure.region3d.EquivalentEllipsoid
      • inra.ijpb.measure.region3d.GeodesicDiameter3D (implements inra.ijpb.algo.AlgoListener)
      • inra.ijpb.measure.region3d.InertiaEllipsoid
      • inra.ijpb.measure.region3d.IntrinsicVolumesAnalyzer3D (implements inra.ijpb.algo.AlgoListener)
      • inra.ijpb.measure.region3d.LargestInscribedBall
      • inra.ijpb.measure.region3d.MaxFeretDiameter3D
    • inra.ijpb.label.edit.ReplaceLabelValues
    • inra.ijpb.morphology.attrfilt.SizeOpening3DQueue (implements inra.ijpb.morphology.attrfilt.SizeOpening3D)
  • inra.ijpb.plugins.AnalyzeMicrostructure3D (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.AnalyzeRegions (implements ij.plugin.filter.PlugInFilter)
  • inra.ijpb.plugins.AnalyzeRegions.Features
  • inra.ijpb.plugins.AnalyzeRegions3D (implements ij.plugin.PlugIn)
  • inra.ijpb.geometry.AngleDiameterPair
  • inra.ijpb.plugins.AreaOpeningPlugin (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.morphology.AttributeFiltering
  • inra.ijpb.measure.region2d.AverageThickness.Result
  • inra.ijpb.plugins.AverageThicknessPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.binary.BinaryImages
  • inra.ijpb.plugins.BinaryOrLabelOverlayPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.BinaryOverlayPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.label.conncomp.Boundary
  • inra.ijpb.label.conncomp.BoundarySet
  • inra.ijpb.plugins.BoundingBox3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.BoundingBoxPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.geometry.Box2D
  • inra.ijpb.geometry.Box3D
  • inra.ijpb.data.image.ByteStackWrapper (implements inra.ijpb.data.image.Image3D)
  • inra.ijpb.plugins.ChamferDistanceMap3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.ChamferDistanceMapPlugin (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.binary.distmap.ChamferMask2D
    • inra.ijpb.binary.distmap.ChamferMask2DW2
    • inra.ijpb.binary.distmap.ChamferMask2DW2Float
    • inra.ijpb.binary.distmap.ChamferMask2DW3
    • inra.ijpb.binary.distmap.ChamferMask2DW4
  • inra.ijpb.binary.distmap.ChamferMask2D.FloatOffset
  • inra.ijpb.binary.distmap.ChamferMask2D.ShortOffset
  • inra.ijpb.binary.distmap.ChamferMask3D
    • inra.ijpb.binary.distmap.ChamferMask3DW3
    • inra.ijpb.binary.distmap.ChamferMask3DW3Float
    • inra.ijpb.binary.distmap.ChamferMask3DW4
    • inra.ijpb.binary.distmap.ChamferMask3DW5
    • inra.ijpb.binary.distmap.ChamferMask3DW6
  • inra.ijpb.binary.distmap.ChamferMask3D.FloatOffset
  • inra.ijpb.binary.distmap.ChamferMask3D.ShortOffset
  • inra.ijpb.binary.ChamferWeights3D.FloatOffset
  • inra.ijpb.binary.ChamferWeights3D.ShortOffset
  • inra.ijpb.geometry.Circle2D
  • inra.ijpb.data.image.ColorImages
  • inra.ijpb.color.ColorMaps
    • inra.ijpb.util.ColorMaps
  • inra.ijpb.binary.ConnectedComponents
  • inra.ijpb.data.border.ConstantBorder (implements inra.ijpb.data.border.BorderManager)
  • inra.ijpb.data.border.ConstantBorder3D (implements inra.ijpb.data.border.BorderManager3D)
  • inra.ijpb.plugins.ConvexifyPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.measure.region2d.Convexity.Result
  • inra.ijpb.plugins.CropLabelPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.data.Cursor2D
  • inra.ijpb.data.Cursor3D
  • inra.ijpb.algo.DefaultAlgoListener (implements inra.ijpb.algo.AlgoListener)
  • inra.ijpb.plugins.DilateLabelsPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.DirectionalFilteringPlugin (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.plugins.DistanceTransformWatershed (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.plugins.DistanceTransformWatershed3D (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.DrawLabelsAsOverlayPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.DrawTableValuesPlugin (implements ij.gui.DialogListener, ij.plugin.PlugIn)
  • inra.ijpb.geometry.Ellipse
  • inra.ijpb.geometry.Ellipsoid
  • inra.ijpb.plugins.EquivalentEllipsePlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.measure.region3d.EquivalentEllipsoid.Moments3D
  • inra.ijpb.plugins.EquivalentEllipsoidPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.ExpandLabelsPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.ExtendBordersPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.ExtendedMinAndMax3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.ExtendedMinAndMaxPlugin (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.watershed.ExtendedMinimaWatershed
  • inra.ijpb.geometry.FeretDiameters
  • inra.ijpb.plugins.FillHolesPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.FillLabelHolesPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.data.image.FloatStackWrapper (implements inra.ijpb.data.image.Image3D)
  • inra.ijpb.morphology.FloodFill
  • inra.ijpb.morphology.FloodFill3D
  • inra.ijpb.binary.conncomp.FloodFillComponentsLabeling.Result
  • inra.ijpb.binary.conncomp.FloodFillComponentsLabeling3D.Result
  • inra.ijpb.measure.region2d.GeodesicDiameter.Result
  • inra.ijpb.measure.region3d.GeodesicDiameter3D.Result
  • inra.ijpb.plugins.GeodesicDiameter3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.GeodesicDiameterPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.GeodesicDistanceMap3D (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.GeodesicDistanceMap3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.GeodesicDistanceMapPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.morphology.GeodesicReconstruction3D
  • inra.ijpb.measure.GeometricMeasures2D
  • inra.ijpb.measure.GeometricMeasures3D
  • inra.ijpb.measure.region3d.GeometryUtils
  • inra.ijpb.plugins.GrayscaleAreaOpeningPlugin (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.plugins.GrayscaleAttributeFiltering3D (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.GrayscaleAttributeFilteringPlugin (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.plugins.GrayscaleBoxDiameterOpeningPlugin (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.util.IJUtils
  • inra.ijpb.math.ImageCalculator
  • inra.ijpb.data.image.Images3D
  • inra.ijpb.shape.ImageShape
  • inra.ijpb.data.image.ImageUtils
  • inra.ijpb.plugins.ImposeMinAndMax3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.ImposeMinAndMaxPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.InertiaEllipsePlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.measure.region3d.InertiaEllipsoid.InertiaMoments3D
  • inra.ijpb.plugins.InertiaEllipsoidPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.IntensityMeasures3D (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.InteractiveGeodesicDistanceMap (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.plugins.InteractiveMarkerControlledWatershed (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.InteractiveMorphologicalReconstruction (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.plugins.InteractiveMorphologicalReconstruction3D (implements ij.plugin.PlugIn)
  • inra.ijpb.measure.region3d.InterfaceSurfaceArea
  • inra.ijpb.plugins.InterfaceSurfaceArea3D (implements ij.plugin.PlugIn)
  • inra.ijpb.measure.IntrinsicVolumes2D
  • inra.ijpb.measure.region2d.IntrinsicVolumes2DUtils
  • inra.ijpb.measure.IntrinsicVolumes3D
  • inra.ijpb.measure.region3d.IntrinsicVolumes3DUtils
  • inra.ijpb.measure.region2d.IntrinsicVolumesAnalyzer2D.Result
  • inra.ijpb.measure.region3d.IntrinsicVolumesAnalyzer3D.Result
  • inra.ijpb.plugins.KeepLargestLabelPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.KeepLargestRegionPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.KillBordersPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.LabelAreaOpeningPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.label.conncomp.LabelBoundariesLabeling2D.Result
  • inra.ijpb.label.conncomp.LabelBoundariesLabeling3D.Result
  • inra.ijpb.plugins.LabelBoundariesPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.LabelEdition (implements ij.plugin.PlugIn)
  • inra.ijpb.measure.LabeledVoxelsMeasure
    • inra.ijpb.measure.IntensityMeasures
  • inra.ijpb.label.LabelImages
    • inra.ijpb.morphology.LabelImages
  • inra.ijpb.plugins.LabelingPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.LabelMapMorphologicalFilteringPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.LabelOverlapMeasures (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.LabelSizeFilteringPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.LabelToRgbPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.LabelToValuePlugin (implements ij.gui.DialogListener, ij.plugin.PlugIn)
  • inra.ijpb.label.LabelUtils
  • inra.ijpb.label.LabelValues
  • inra.ijpb.label.LabelValues.Position3DValuePair
  • inra.ijpb.label.LabelValues.PositionValuePair
  • inra.ijpb.morphology.strel.LocalBufferedHistogram
  • inra.ijpb.morphology.strel.LocalExtremumBufferDouble (implements inra.ijpb.morphology.strel.LocalExtremum)
  • inra.ijpb.morphology.strel.LocalExtremumBufferGray8 (implements inra.ijpb.morphology.strel.LocalExtremum)
  • inra.ijpb.plugins.MarkerControlledWatershed3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.MaxFeretDiameterPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.MaxInscribedCirclePlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.MaxInscribedSpherePlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.MergeLabelsPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.MicrostructureAnalysisPlugin (implements ij.plugin.filter.PlugInFilter)
  • inra.ijpb.morphology.MinimaAndMaxima
  • inra.ijpb.morphology.MinimaAndMaxima3D
  • inra.ijpb.data.border.MirroringBorder (implements inra.ijpb.data.border.BorderManager)
  • inra.ijpb.data.border.MirroringBorder3D (implements inra.ijpb.data.border.BorderManager3D)
  • inra.ijpb.plugins.MorphologicalFilter3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.MorphologicalFilterCross3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.MorphologicalFilterPlugin (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.plugins.MorphologicalReconstruction3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.MorphologicalReconstructionPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.MorphologicalSegmentation (implements ij.plugin.PlugIn)
  • inra.ijpb.morphology.Morphology
  • inra.ijpb.data.Neighborhood2D
    • inra.ijpb.data.Neighborhood2DC4
    • inra.ijpb.data.Neighborhood2DC8
  • inra.ijpb.data.Neighborhood3D
    • inra.ijpb.data.Neighborhood3DC26
    • inra.ijpb.data.Neighborhood3DC6
  • inra.ijpb.plugins.NeighborLabelsPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.OrientedBoundingBoxPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.geometry.OrientedBox2D
  • inra.ijpb.morphology.directional.OrientedLineStrelFactory (implements inra.ijpb.morphology.directional.OrientedStrelFactory)
  • inra.ijpb.plugins.ParticleAnalysis3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.data.border.PeriodicBorder (implements inra.ijpb.data.border.BorderManager)
  • inra.ijpb.data.border.PeriodicBorder3D (implements inra.ijpb.data.border.BorderManager3D)
  • inra.ijpb.data.PixelRecord (implements java.lang.Comparable<T>)
  • inra.ijpb.geometry.Point3D
  • inra.ijpb.geometry.PointPair2D
  • inra.ijpb.geometry.PointPair3D
  • inra.ijpb.geometry.Polygon2D (implements java.lang.Iterable<T>)
  • inra.ijpb.geometry.Polygons2D
  • inra.ijpb.morphology.Reconstruction
    • inra.ijpb.morphology.GeodesicReconstruction
  • inra.ijpb.morphology.Reconstruction3D
  • inra.ijpb.label.RegionAdjacencyGraph
  • inra.ijpb.label.RegionAdjacencyGraph.LabelPair (implements java.lang.Comparable<T>)
  • inra.ijpb.plugins.RegionAdjacencyGraphPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.morphology.extrema.RegionalExtremaAlgo
    • inra.ijpb.morphology.extrema.RegionalExtremaByFlooding
  • inra.ijpb.plugins.RegionalMinAndMax3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.RegionalMinAndMaxPlugin (implements ij.gui.DialogListener, ij.plugin.filter.ExtendedPlugInFilter)
  • inra.ijpb.measure.region2d.RegionBoundaries
  • inra.ijpb.measure.region3d.RegionBoundaries3D
  • inra.ijpb.plugins.RegionBoundariesLabelingPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.RegionMorphometryPlugin (implements ij.plugin.filter.PlugInFilter)
  • inra.ijpb.plugins.RemapLabelsPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.RemoveBorderLabelsPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.RemoveLargestLabelPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.RemoveLargestRegionPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.ReplaceLabelValuesPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.ReplaceValuePlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.data.border.ReplicatedBorder (implements inra.ijpb.data.border.BorderManager)
  • inra.ijpb.data.border.ReplicatedBorder3D (implements inra.ijpb.data.border.BorderManager3D)
  • inra.ijpb.measure.ResultsBuilder
  • inra.ijpb.plugins.SelectLabelsPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.plugins.SetLabelMapPlugin (implements ij.gui.DialogListener, ij.plugin.PlugIn)
  • inra.ijpb.morphology.strel.ShiftedCross3x3Strel
  • inra.ijpb.data.image.ShortStackWrapper (implements inra.ijpb.data.image.Image3D)
  • inra.ijpb.plugins.SizeOpeningPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.geometry.Sphere
  • inra.ijpb.geometry.StraightLine2D
  • inra.ijpb.segment.Threshold
  • inra.ijpb.geometry.Vector2D
  • inra.ijpb.measure.Vector3d
  • inra.ijpb.geometry.Vector3D
  • inra.ijpb.data.VoxelRecord (implements java.lang.Comparable<T>)
  • inra.ijpb.watershed.Watershed
  • inra.ijpb.plugins.Watershed3DPlugin (implements ij.plugin.PlugIn)
  • inra.ijpb.watershed.WatershedTransform2D
    • inra.ijpb.watershed.MarkerControlledWatershedTransform2D
  • inra.ijpb.watershed.WatershedTransform3D
    • inra.ijpb.watershed.MarkerControlledWatershedTransform3D

Interface Hierarchy

• inra.ijpb.algo.Algo
  • inra.ijpb.morphology.attrfilt.AreaOpening
  • inra.ijpb.binary.distmap.ChamferDistanceTransform2D
  • inra.ijpb.label.distmap.ChamferDistanceTransform2D
  • inra.ijpb.binary.distmap.ChamferDistanceTransform3D
  • inra.ijpb.label.distmap.ChamferDistanceTransform3D
  • inra.ijpb.binary.conncomp.ConnectedComponentsLabeling
  • inra.ijpb.binary.conncomp.ConnectedComponentsLabeling3D
  • inra.ijpb.binary.distmap.DistanceTransform
    • inra.ijpb.binary.distmap.ChamferDistanceTransform2D
  • inra.ijpb.label.distmap.DistanceTransform2D
    • inra.ijpb.label.distmap.ChamferDistanceTransform2D
  • inra.ijpb.binary.distmap.DistanceTransform3D
    • inra.ijpb.binary.distmap.ChamferDistanceTransform3D
  • inra.ijpb.label.distmap.DistanceTransform3D
    • inra.ijpb.label.distmap.ChamferDistanceTransform3D
  • inra.ijpb.binary.geodesic.GeodesicDiameter
  • inra.ijpb.binary.geodesic.GeodesicDiameter3D
  • inra.ijpb.binary.geodesic.GeodesicDistanceTransform
  • inra.ijpb.binary.geodesic.GeodesicDistanceTransform3D
  • inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgo
  • inra.ijpb.morphology.strel.InPlaceStrel (also extends inra.ijpb.morphology.strel.InPlaceStrel3D, inra.ijpb.morphology.Strel)
  • inra.ijpb.morphology.strel.InPlaceStrel3D
    • inra.ijpb.morphology.strel.InPlaceStrel (also extends inra.ijpb.morphology.Strel)
  • inra.ijpb.morphology.strel.SeparableStrel
  • inra.ijpb.morphology.strel.SeparableStrel3D
  • inra.ijpb.morphology.attrfilt.SizeOpening3D
  • inra.ijpb.morphology.Strel
    • inra.ijpb.morphology.strel.InPlaceStrel (also extends inra.ijpb.morphology.strel.InPlaceStrel3D)
    • inra.ijpb.morphology.strel.SeparableStrel
  • inra.ijpb.morphology.Strel3D
    • inra.ijpb.morphology.strel.InPlaceStrel (also extends inra.ijpb.morphology.strel.InPlaceStrel3D, inra.ijpb.morphology.Strel)
    • inra.ijpb.morphology.strel.InPlaceStrel3D
      • inra.ijpb.morphology.strel.InPlaceStrel (also extends inra.ijpb.morphology.Strel)
    • inra.ijpb.morphology.strel.SeparableStrel
    • inra.ijpb.morphology.strel.SeparableStrel3D
    • inra.ijpb.morphology.Strel
      • inra.ijpb.morphology.strel.InPlaceStrel (also extends inra.ijpb.morphology.strel.InPlaceStrel3D)
      • inra.ijpb.morphology.strel.SeparableStrel
• inra.ijpb.algo.AlgoListener
• inra.ijpb.data.border.BorderManager
• inra.ijpb.data.border.BorderManager3D
• inra.ijpb.morphology.geodrec.GeodesicReconstructionAlgo
• inra.ijpb.data.image.Image3D
• inra.ijpb.math.ImageCalculator.Operation
• inra.ijpb.morphology.strel.LocalExtremum
• inra.ijpb.morphology.directional.OrientedStrelFactory
• inra.ijpb.measure.RegionAnalyzer<T>
• inra.ijpb.label.select.RelationalOperator

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • inra.ijpb.binary.ChamferWeights3D
    • inra.ijpb.binary.ChamferWeights
    • inra.ijpb.binary.distmap.ChamferMasks3D
    • inra.ijpb.binary.distmap.ChamferMasks2D
    • inra.ijpb.color.ColorMaps.CommonLabelMaps
    • inra.ijpb.color.CommonColors
    • inra.ijpb.morphology.Strel.Shape
    • inra.ijpb.morphology.Morphology.Operation
    • inra.ijpb.morphology.Strel3D.Shape
    • inra.ijpb.morphology.directional.DirectionalFilter.Type
    • inra.ijpb.morphology.directional.DirectionalFilter.Operation
    • inra.ijpb.morphology.geodrec.GeodesicReconstructionType
    • inra.ijpb.morphology.strel.LocalExtremum.Type
    • inra.ijpb.morphology.extrema.ExtremaType
    • inra.ijpb.plugins.RegionalMinAndMaxPlugin.Operation
    • inra.ijpb.plugins.LabelMapMorphologicalFilteringPlugin.Operation
    • inra.ijpb.plugins.MorphologicalSegmentation.ResultMode
    • inra.ijpb.plugins.ExtendedMinAndMax3DPlugin.Operation
    • inra.ijpb.plugins.RegionalMinAndMax3DPlugin.Operation
    • inra.ijpb.plugins.MorphologicalReconstructionPlugin.Operation
    • inra.ijpb.plugins.LabelSizeFilteringPlugin.Operation
    • inra.ijpb.plugins.ImposeMinAndMax3DPlugin.Operation
    • inra.ijpb.plugins.Connectivity2D
    • inra.ijpb.plugins.Connectivity3D
    • inra.ijpb.plugins.InteractiveMarkerControlledWatershed.ResultMode
    • inra.ijpb.plugins.ImposeMinAndMaxPlugin.Operation
    • inra.ijpb.plugins.ExtendedMinAndMaxPlugin.Operation
    • inra.ijpb.plugins.MorphologicalReconstruction3DPlugin.Operation
    • inra.ijpb.util.CommonColors
    • inra.ijpb.data.border.BorderManager3D.Type
    • inra.ijpb.data.border.BorderManager.Type