inra.ijpb.measure.region3d

Class BoundingBox3D

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.measure.region3d.RegionAnalyzer3D<Box3D>

inra.ijpb.measure.region3d.BoundingBox3D

All Implemented Interfaces:

Algo, AlgoListener, RegionAnalyzer<Box3D>

public class BoundingBox3D
extends RegionAnalyzer3D<Box3D>

Compute bounding box of each region within a label or binary image.

Author:

dlegland

Constructor Summary

Constructors

Constructor and Description
BoundingBox3D() Default constructor

Method Summary

Modifier and Type	Method and Description
Box3D[]	analyzeRegions(ij.ImageStack image, int[] labels, ij.measure.Calibration calib) Computes the bounding box of each region within a 3D label image.
static Box3D[]	boundingBoxes(ij.ImageStack labelImage, int[] labels, ij.measure.Calibration calib) Compute bounding box of each region in input 3D label image and returns the result as an array of Box3D for each region.
ij.measure.ResultsTable	createTable(Map<Integer,Box3D> map) Utility method that transforms the mapping between labels and Box3D instances into a ResultsTable that can be displayed with ImageJ.

Methods inherited from class inra.ijpb.measure.region3d.RegionAnalyzer3D

algoProgressChanged, algoStatusChanged, analyzeRegions, analyzeRegions, computeTable, createMap

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BoundingBox3D

public BoundingBox3D()

Default constructor

Method Detail

boundingBoxes

public static final Box3D[] boundingBoxes(ij.ImageStack labelImage,
                                          int[] labels,
                                          ij.measure.Calibration calib)

Compute bounding box of each region in input 3D label image and returns the result as an array of Box3D for each region.

Parameters:

labelImage - the input image containing label of particles

labels - an array of unique labels in image

calib - the calibration of the image

Returns:

an array of Box3D instances containing for each region its extent in each dimension

analyzeRegions

public Box3D[] analyzeRegions(ij.ImageStack image,
                              int[] labels,
                              ij.measure.Calibration calib)

Computes the bounding box of each region within a 3D label image.

Specified by:

analyzeRegions in class RegionAnalyzer3D<Box3D>

Parameters:

image - the input image containing label of particles

labels - the array of labels within the image

calib - the calibration of the image

Returns:

an array of Box3D representing the calibrated coordinates of the bounding box of each region

createTable

public ij.measure.ResultsTable createTable(Map<Integer,Box3D> map)

Utility method that transforms the mapping between labels and Box3D instances into a ResultsTable that can be displayed with ImageJ.

Parameters:

map - the mapping between labels and Box3D instances

Returns:

a ResultsTable that can be displayed with ImageJ.