inra.ijpb.plugins

Class GeodesicDistanceMapPlugin

java.lang.Object

inra.ijpb.plugins.GeodesicDistanceMapPlugin

All Implemented Interfaces:

ij.plugin.PlugIn

public class GeodesicDistanceMapPlugin
extends Object
implements ij.plugin.PlugIn

Plugin for computing geodesic distance map from binary marker and constrained to binary or label images using chamfer distances propagation.

Author:

dlegland

Constructor Summary

Constructors

Constructor and Description
GeodesicDistanceMapPlugin()

Method Summary

Modifier and Type	Method and Description
Object[]	exec(ij.ImagePlus marker, ij.ImagePlus mask, String newName, float[] weights) Deprecated.
Object[]	exec(ij.ImagePlus marker, ij.ImagePlus mask, String newName, float[] weights, boolean normalize) Deprecated. use process method instead
Object[]	exec(ij.ImagePlus marker, ij.ImagePlus mask, String newName, short[] weights, boolean normalize) Deprecated. use process method instead
ij.ImagePlus	process(ij.ImagePlus marker, ij.ImagePlus mask, String newName, ChamferMask2D weights, boolean floatComputation, boolean normalize) Computes the distance propagated from the boundary of the white particles, within the black phase.
ij.ImagePlus	process(ij.ImagePlus markerPlus, ij.ImagePlus maskPlus, String newName, float[] weights, boolean normalize) Deprecated.
ij.process.ImageProcessor	process(ij.process.ImageProcessor marker, ij.process.ImageProcessor mask, float[] weights, boolean normalize) Deprecated.
void	run(String arg0)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GeodesicDistanceMapPlugin

public GeodesicDistanceMapPlugin()

Method Detail

run

public void run(String arg0)

Specified by:

run in interface ij.plugin.PlugIn

exec

@Deprecated
public Object[] exec(ij.ImagePlus marker,
                                 ij.ImagePlus mask,
                                 String newName,
                                 float[] weights)

Deprecated.

Computes the distance within the mask, starting from the marker image.

Parameters:

marker - the binary marker image from which distances will be propagated

mask - the binary mask image that will constrain the propagation

newName - the name of the result image

weights - the set of chamfer weights for computing distances

Returns:

the geodesic distance map

exec

@Deprecated
public Object[] exec(ij.ImagePlus marker,
                                 ij.ImagePlus mask,
                                 String newName,
                                 float[] weights,
                                 boolean normalize)

Deprecated. use process method instead

Computes the distance propagated from the boundary of the white particles, within the white phase.

Parameters:

marker - the binary marker image from which distances will be propagated

mask - the binary mask image that will constrain the propagation

newName - the name of the result image

weights - the set of chamfer weights for computing distances

normalize - specifies whether the resulting distance map should be normalized

Returns:

an array of object, containing the name of the new image, and the new ImagePlus instance

exec

@Deprecated
public Object[] exec(ij.ImagePlus marker,
                                 ij.ImagePlus mask,
                                 String newName,
                                 short[] weights,
                                 boolean normalize)

Deprecated. use process method instead

Computes the distance propagated from the boundary of the white particles, within the black phase.

Parameters:

marker - the binary marker image from which distances will be propagated

mask - the binary mask image that will constrain the propagation

newName - the name of the result image

weights - the set of chamfer weights for computing distances

normalize - specifies whether the resulting distance map should be normalized

Returns:

an array of object, containing the name of the new image, and the new ImagePlus instance

process

@Deprecated
public ij.ImagePlus process(ij.ImagePlus markerPlus,
                                        ij.ImagePlus maskPlus,
                                        String newName,
                                        float[] weights,
                                        boolean normalize)

Deprecated.

Computes the distance propagated from the boundary of the white particles, within the white phase.

Parameters:

markerPlus - the binary marker image from which distances will be propagated

maskPlus - the binary mask image that will constrain the propagation

newName - the name of the result image

weights - the set of chamfer weights for computing distances

normalize - specifies whether the resulting distance map should be normalized

Returns:

an array of object, containing the name of the new image, and the new ImagePlus instance

process

@Deprecated
public ij.process.ImageProcessor process(ij.process.ImageProcessor marker,
                                                     ij.process.ImageProcessor mask,
                                                     float[] weights,
                                                     boolean normalize)

Deprecated.

Computes the distance within the mask, starting from the marker image.

Parameters:

marker - the binary marker image from which distances will be propagated

mask - the binary mask image that will constrain the propagation

weights - the set of chamfer weights for computing distances

normalize - specifies whether the resulting distance map should be normalized

Returns:

the geodesic distance map

process

public ij.ImagePlus process(ij.ImagePlus marker,
                            ij.ImagePlus mask,
                            String newName,
                            ChamferMask2D weights,
                            boolean floatComputation,
                            boolean normalize)

Computes the distance propagated from the boundary of the white particles, within the black phase.

Parameters:

marker - the binary marker image from which distances will be propagated

mask - the binary mask image that will constrain the propagation

newName - the name of the result image

weights - the set of chamfer weights for computing distances

floatComputation - specifies whether floating point computation should be used

normalize - specifies whether the resulting distance map should be normalized

Returns:

an array of object, containing the name of the new image, and the new ImagePlus instance