inra.ijpb.morphology.geodrec

Class GeodesicReconstructionByDilation3DScanningGray8

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub

inra.ijpb.morphology.geodrec.GeodesicReconstructionByDilation3DScanningGray8

All Implemented Interfaces:

Algo, GeodesicReconstruction3DAlgo

public class GeodesicReconstructionByDilation3DScanningGray8
extends GeodesicReconstruction3DAlgoStub

Geodesic reconstruction by dilation for 3D stacks of byte processors, using scanning algorithm. This version uses iterations of forward and backward passes until no more modifications are made.

Author:

David Legland

See Also:

GeodesicReconstructionByDilation3DScanning, GeodesicReconstruction3DHybrid0Gray8

Field Summary

Fields inherited from class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub

connectivity, showProgress, showStatus, verbose

Constructor Summary

Constructors

Constructor and Description
GeodesicReconstructionByDilation3DScanningGray8() Creates a new instance of geodesic reconstruction by dilation algorithm, using the default connectivity 6.
GeodesicReconstructionByDilation3DScanningGray8(int connectivity) Creates a new instance of geodesic reconstruction by dilation algorithm, that specifies the connectivity to use.

Method Summary

Modifier and Type	Method and Description
ij.ImageStack	applyTo(ij.ImageStack marker, ij.ImageStack mask) Run the reconstruction by dilation algorithm using the images specified as argument.
ij.ImageStack	applyTo(ij.ImageStack marker, ij.ImageStack mask, ij.ImageStack binaryMask) Run the reconstruction by dilation algorithm using the images specified as argument.

Methods inherited from class inra.ijpb.morphology.geodrec.GeodesicReconstruction3DAlgoStub

getConnectivity, setConnectivity, showProgress, showProgress, showStatus, trace

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface inra.ijpb.algo.Algo

addAlgoListener, removeAlgoListener

Constructor Detail

GeodesicReconstructionByDilation3DScanningGray8

public GeodesicReconstructionByDilation3DScanningGray8()

Creates a new instance of geodesic reconstruction by dilation algorithm, using the default connectivity 6.

GeodesicReconstructionByDilation3DScanningGray8

public GeodesicReconstructionByDilation3DScanningGray8(int connectivity)

Creates a new instance of geodesic reconstruction by dilation algorithm, that specifies the connectivity to use.

Parameters:

connectivity - the 3D connectivity to use (either 6 or 26)

Method Detail

applyTo

public ij.ImageStack applyTo(ij.ImageStack marker,
                             ij.ImageStack mask)

Run the reconstruction by dilation algorithm using the images specified as argument.

Parameters:

marker - image used to initialize the reconstruction

mask - image used to constrain the reconstruction

Returns:

the geodesic reconstruction of marker image constrained by mask image

applyTo

public ij.ImageStack applyTo(ij.ImageStack marker,
                             ij.ImageStack mask,
                             ij.ImageStack binaryMask)

Run the reconstruction by dilation algorithm using the images specified as argument.

Parameters:

marker - image used to initialize the reconstruction

mask - image used to constrain the reconstruction

binaryMask - binary mask to restrict the region of application

Returns:

the geodesic reconstruction of marker image constrained by mask image