inra.ijpb.binary.geodesic

Class GeodesicDistanceTransformShort5x5

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.binary.geodesic.GeodesicDistanceTransformShort5x5

All Implemented Interfaces:

Algo, GeodesicDistanceTransform

Deprecated.

replaced by GeodesicDistanceTransformShort (since 1.5.0)

@Deprecated
public class GeodesicDistanceTransformShort5x5
extends AlgoStub
implements GeodesicDistanceTransform

Computation of Chamfer geodesic distances using short integer array for storing result, and 5-by-5 chamfer masks. The maximum propagated distance is limited to Short.MAX_VALUE. All computations are performed using integers, results are stored as shorts.

Author:

David Legland

Field Summary

Fields

Modifier and Type	Field and Description
static short	MAX_DIST Deprecated. The value used to initialize the distance map.

Constructor Summary

Constructors

Constructor and Description
GeodesicDistanceTransformShort5x5(ChamferWeights weights, boolean normalizeMap) Deprecated. Creates a new algorithm for propagating geodesic distances.
GeodesicDistanceTransformShort5x5(short[] weights) Deprecated. Creates a new algorithm for propagating geodesic distances.
GeodesicDistanceTransformShort5x5(short[] weights, boolean normalizeMap) Deprecated. Creates a new algorithm for propagating geodesic distances.

Method Summary

Modifier and Type	Method and Description
ij.process.ImageProcessor	geodesicDistanceMap(ij.process.ImageProcessor marker, ij.process.ImageProcessor mask) Deprecated. Computes the geodesic distance function for each pixel in mask label image, using the given binary marker image.

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface inra.ijpb.algo.Algo

addAlgoListener, removeAlgoListener

Field Detail

MAX_DIST

public static final short MAX_DIST

Deprecated.

The value used to initialize the distance map.

See Also:

Constant Field Values

Constructor Detail

GeodesicDistanceTransformShort5x5

public GeodesicDistanceTransformShort5x5(short[] weights)

Deprecated.

Creates a new algorithm for propagating geodesic distances.

Parameters:

weights - the weights to use for propagating distances

GeodesicDistanceTransformShort5x5

public GeodesicDistanceTransformShort5x5(ChamferWeights weights,
                                         boolean normalizeMap)

Deprecated.

Creates a new algorithm for propagating geodesic distances.

Parameters:

weights - the weights to use for propagating distances

normalizeMap - the flag for normalization

GeodesicDistanceTransformShort5x5

public GeodesicDistanceTransformShort5x5(short[] weights,
                                         boolean normalizeMap)

Deprecated.

Creates a new algorithm for propagating geodesic distances.

Parameters:

weights - the weights to use for propagating distances

normalizeMap - the flag for normalization

Method Detail

geodesicDistanceMap

public ij.process.ImageProcessor geodesicDistanceMap(ij.process.ImageProcessor marker,
                                                     ij.process.ImageProcessor mask)

Deprecated.

Computes the geodesic distance function for each pixel in mask label image, using the given binary marker image. Mask and marker should be ImageProcessor the same size and containing integer values. The function returns a new ShortProcessor the same size as the input, with values greater or equal to zero.

Specified by:

geodesicDistanceMap in interface GeodesicDistanceTransform

Parameters:

marker - the binary marker image

mask - the label image used as mask

Returns:

the geodesic distance map from the marker image within each label of the mask

See Also:

GeodesicDistanceTransform.geodesicDistanceMap(ij.process.ImageProcessor, ij.process.ImageProcessor)