inra.ijpb.measure

Class LabeledVoxelsMeasure

java.lang.Object

inra.ijpb.measure.LabeledVoxelsMeasure

Direct Known Subclasses:

IntensityMeasures

public class LabeledVoxelsMeasure
extends Object

Mother class to extract measures from pairs of grayscale and labeled images.

Author:

Ignacio Arganda-Carreras

Constructor Summary

Constructors

Constructor and Description
LabeledVoxelsMeasure(ij.ImagePlus inputImage, ij.ImagePlus labelImage) Initialize the measurements by reading the input (grayscale) image and its corresponding labels.

Method Summary

Modifier and Type	Method and Description
ij.measure.ResultsTable	getNumberOfVoxels() Get number of voxels per label
ij.measure.ResultsTable	getSumOfVoxels() Get sum of all voxel intensities per labeled object
ij.measure.ResultsTable	getVolume() Get volume per labeled object based on the input image calibration

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LabeledVoxelsMeasure

public LabeledVoxelsMeasure(ij.ImagePlus inputImage,
                            ij.ImagePlus labelImage)

Initialize the measurements by reading the input (grayscale) image and its corresponding labels.

Parameters:

inputImage - input (grayscale) image

labelImage - label image (labels are positive integer values)

Method Detail

getNumberOfVoxels

public ij.measure.ResultsTable getNumberOfVoxels()

Get number of voxels per label

Returns:

number of voxels per label

getSumOfVoxels

public ij.measure.ResultsTable getSumOfVoxels()

Get sum of all voxel intensities per labeled object

Returns:

sum of voxel intensities (Integrated Density) per labeled object

getVolume

public ij.measure.ResultsTable getVolume()

Get volume per labeled object based on the input image calibration

Returns:

volume per labeled object