inra.ijpb.plugins

Class GeodesicDistanceMap3DPlugin

java.lang.Object

inra.ijpb.plugins.GeodesicDistanceMap3DPlugin

All Implemented Interfaces:

ij.plugin.PlugIn

public class GeodesicDistanceMap3DPlugin
extends Object
implements ij.plugin.PlugIn

Plugin for computing geodesic distance map from binary 3D images using chamfer weights.

Author:

dlegland

Constructor Summary

Constructors

Constructor and Description
GeodesicDistanceMap3DPlugin()

Method Summary

Modifier and Type	Method and Description
ij.ImagePlus	process(ij.ImagePlus markerPlus, ij.ImagePlus maskPlus, String newName, ChamferMask3D chamferMask, boolean normalize) Computes the distance propagated from the boundary of the white particles, within the white phase.
ij.ImagePlus	process(ij.ImagePlus markerPlus, ij.ImagePlus maskPlus, String newName, float[] weights, boolean normalize) Deprecated.
ij.ImageStack	process(ij.ImageStack marker, ij.ImageStack mask, ChamferMask3D chamferMask, boolean normalize) Computes the distance within the mask, starting from the marker image.
ij.ImageStack	process(ij.ImageStack marker, ij.ImageStack mask, float[] weights, boolean normalize) Deprecated.
void	run(String arg0)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GeodesicDistanceMap3DPlugin

public GeodesicDistanceMap3DPlugin()

Method Detail

run

public void run(String arg0)

Specified by:

run in interface ij.plugin.PlugIn

process

public ij.ImagePlus process(ij.ImagePlus markerPlus,
                            ij.ImagePlus maskPlus,
                            String newName,
                            ChamferMask3D chamferMask,
                            boolean normalize)

Computes the distance propagated from the boundary of the white particles, within the white phase.

Parameters:

markerPlus - the binary marker image from which distances will be propagated

maskPlus - the binary mask image that will constrain the propagation

newName - the name of the result image

chamferMask - the set of chamfer weights for computing distances

normalize - specifies whether the resulting distance map should be normalized

Returns:

an array of object, containing the name of the new image, and the new ImagePlus instance

process

@Deprecated
public ij.ImagePlus process(ij.ImagePlus markerPlus,
                                        ij.ImagePlus maskPlus,
                                        String newName,
                                        float[] weights,
                                        boolean normalize)

Deprecated.

Computes the distance propagated from the boundary of the white particles, within the white phase.

Parameters:

markerPlus - the binary marker image from which distances will be propagated

maskPlus - the binary mask image that will constrain the propagation

newName - the name of the result image

weights - the set of chamfer weights for computing distances

normalize - specifies whether the resulting distance map should be normalized

Returns:

an array of object, containing the name of the new image, and the new ImagePlus instance

process

@Deprecated
public ij.ImageStack process(ij.ImageStack marker,
                                         ij.ImageStack mask,
                                         float[] weights,
                                         boolean normalize)

Deprecated.

Computes the distance within the mask, starting from the marker image.

Parameters:

marker - the binary marker image from which distances will be propagated

mask - the binary mask image that will constrain the propagation

weights - the set of chamfer weights for computing distances

normalize - specifies whether the resulting distance map should be normalized

Returns:

the geodesic distance map

process

public ij.ImageStack process(ij.ImageStack marker,
                             ij.ImageStack mask,
                             ChamferMask3D chamferMask,
                             boolean normalize)

Computes the distance within the mask, starting from the marker image.

Parameters:

marker - the binary marker image from which distances will be propagated

mask - the binary mask image that will constrain the propagation

chamferMask - the chamfer mask used for computing distances

normalize - specifies whether the resulting distance map should be normalized

Returns:

an array of object, containing the name of the new image, and the new ImagePlus instance