inra.ijpb.measure.region3d

Class InertiaEllipsoid

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.measure.region3d.RegionAnalyzer3D<Ellipsoid>

inra.ijpb.measure.region3d.InertiaEllipsoid

All Implemented Interfaces:

Algo, AlgoListener, RegionAnalyzer<Ellipsoid>

Deprecated.

replaced by EquivalentEllipsoid (since 1.4.1)

@Deprecated
public class InertiaEllipsoid
extends RegionAnalyzer3D<Ellipsoid>

Compute parameters of inertia ellipsoids from 3D binary / label images.

Author:

dlegland

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	InertiaEllipsoid.InertiaMoments3D Deprecated. Inner class for storing result if moments computation.

Constructor Summary

Constructors

Constructor and Description
InertiaEllipsoid() Deprecated. Default constructor

Method Summary

Modifier and Type	Method and Description
Ellipsoid[]	analyzeRegions(ij.ImageStack image, int[] labels, ij.measure.Calibration calib) Deprecated. Computes inertia ellipsoid of each region in the input 3D label image.
InertiaEllipsoid.InertiaMoments3D[]	computeMoments(ij.ImageStack image, int[] labels, ij.measure.Calibration calib) Deprecated. Computes the matrix of moments for each region within the 3D label map.
ij.measure.ResultsTable	createTable(Map<Integer,Ellipsoid> map) Deprecated. Utility method that transforms the mapping between labels and inertia ellipsoids instances into a ResultsTable that can be displayed with ImageJ.
static Ellipsoid[]	inertiaEllipsoids(ij.ImageStack image, int[] labels, ij.measure.Calibration calib) Deprecated. Computes inertia ellipsoid of each region in the input 3D label image.

Methods inherited from class inra.ijpb.measure.region3d.RegionAnalyzer3D

algoProgressChanged, algoStatusChanged, analyzeRegions, analyzeRegions, computeTable, createMap

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InertiaEllipsoid

public InertiaEllipsoid()

Deprecated.

Default constructor

Method Detail

inertiaEllipsoids

public static final Ellipsoid[] inertiaEllipsoids(ij.ImageStack image,
                                                  int[] labels,
                                                  ij.measure.Calibration calib)

Deprecated.

Computes inertia ellipsoid of each region in the input 3D label image.

Parameters:

image - the input image containing label of particles

labels - the array of labels within the image

calib - the calibration of the image

Returns:

an array of Ellipsoid instances representing the calibrated coordinates of the inertia ellipsoid of each region

createTable

public ij.measure.ResultsTable createTable(Map<Integer,Ellipsoid> map)

Deprecated.

Utility method that transforms the mapping between labels and inertia ellipsoids instances into a ResultsTable that can be displayed with ImageJ.

Parameters:

map - the mapping between labels and Inertia Ellipsoids

Returns:

a ResultsTable that can be displayed with ImageJ.

analyzeRegions

public Ellipsoid[] analyzeRegions(ij.ImageStack image,
                                  int[] labels,
                                  ij.measure.Calibration calib)

Deprecated.

Computes inertia ellipsoid of each region in the input 3D label image.

Specified by:

analyzeRegions in class RegionAnalyzer3D<Ellipsoid>

Parameters:

image - the input image containing label of particles

labels - the array of labels within the image

calib - the calibration of the image

Returns:

an array of Ellipsoid instances representing the calibrated coordinates of the inertia ellipsoid of each region

computeMoments

public InertiaEllipsoid.InertiaMoments3D[] computeMoments(ij.ImageStack image,
                                                          int[] labels,
                                                          ij.measure.Calibration calib)

Deprecated.

Computes the matrix of moments for each region within the 3D label map.

Parameters:

image - the 3D image of labels (label map)

labels - the array of region labels to process

calib - the spatial calibration of the image

Returns:

an array the same size as labels, containing for each processed region result of 3D Moments computations