inra.ijpb.morphology.extrema

Class RegionalExtrema3DByFlooding

java.lang.Object

inra.ijpb.algo.AlgoStub

inra.ijpb.morphology.extrema.RegionalExtrema3DAlgo

inra.ijpb.morphology.extrema.RegionalExtrema3DByFlooding

All Implemented Interfaces:

Algo

public class RegionalExtrema3DByFlooding
extends RegionalExtrema3DAlgo

Computes regional extrema in 3D images using flooding algorithm. This class manages 6 and 26 connectivities as well as integer and floating-point images. Example of use:

 ImageStack image = IJ.getImage().getStack();
 RegionalExtrema3DAlgo algo = new RegionalExtrema3DFlooding(); 
 algo.setExtremaType(ExtremaType.MAXIMA);
 algo.setConnectivity(6);
 ImageStack result = algo.applyTo(image);
 ImagePlus resPlus = new ImagePlus("Regional Maxima", result); 
 resPlus.show(); 
 

Author:

David Legland

See Also:

MinimaAndMaxima3D, FloodFill

Constructor Summary

Constructors

Constructor and Description
RegionalExtrema3DByFlooding()

Method Summary

Modifier and Type	Method and Description
ij.ImageStack	applyTo(ij.ImageStack image) Applies this regional extrema algorithm on the 3D image given as argument, and returns the result as a binary image stack.
ij.ImageStack	applyTo(ij.ImageStack inputImage, ij.ImageStack maskImage) Applies this regional extrema algorithm on the 3D image given as argument and using the given mask, and returns the result as a binary image stack.

Methods inherited from class inra.ijpb.morphology.extrema.RegionalExtrema3DAlgo

getConnectivity, getExtremaType, isProgressVisible, setConnectivity, setExtremaType, setProgressVisible

Methods inherited from class inra.ijpb.algo.AlgoStub

addAlgoListener, fireProgressChanged, fireProgressChanged, fireStatusChanged, fireStatusChanged, removeAlgoListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RegionalExtrema3DByFlooding

public RegionalExtrema3DByFlooding()

Method Detail

applyTo

public ij.ImageStack applyTo(ij.ImageStack image)

Description copied from class: RegionalExtrema3DAlgo

Applies this regional extrema algorithm on the 3D image given as argument, and returns the result as a binary image stack.

Specified by:

applyTo in class RegionalExtrema3DAlgo

Parameters:

image - the 3D image to process

Returns:

the result of regional extrema detection

applyTo

public ij.ImageStack applyTo(ij.ImageStack inputImage,
                             ij.ImageStack maskImage)

Description copied from class: RegionalExtrema3DAlgo

Applies this regional extrema algorithm on the 3D image given as argument and using the given mask, and returns the result as a binary image stack.

Specified by:

applyTo in class RegionalExtrema3DAlgo

Parameters:

inputImage - the 3D image to process

maskImage - a binary mask

Returns:

the result of regional extrema detection