inra.ijpb.measure

Class IntensityMeasures

java.lang.Object

inra.ijpb.measure.LabeledVoxelsMeasure

inra.ijpb.measure.IntensityMeasures

public class IntensityMeasures
extends LabeledVoxelsMeasure

Class to facilitate the calculation of intensity measures by grouping together voxels belonging to the same label.

Author:

Ignacio Arganda-Carreras

Constructor Summary

Constructors

Constructor and Description
IntensityMeasures(ij.ImagePlus inputImage, ij.ImagePlus labelImage) Initialize the measurements by reading the input (grayscale) image and its corresponding labels.

Method Summary

Modifier and Type	Method and Description
ij.measure.ResultsTable	getKurtosis() Get kurtosis voxel values per label
ij.measure.ResultsTable	getMax() Get maximum voxel values per label
ij.measure.ResultsTable	getMean() Get mean voxel values per label
ij.measure.ResultsTable	getMedian() Get median voxel values per label
ij.measure.ResultsTable	getMin() Get minimum voxel values per label
ij.measure.ResultsTable	getMode() Get mode voxel values per label
ij.measure.ResultsTable	getNeighborsKurtosis() Get the intensity kurtosis values of the neighbor labels
ij.measure.ResultsTable	getNeighborsMax() Get the maximum intensity values of the neighbor labels
ij.measure.ResultsTable	getNeighborsMean() Get the mean intensity values of the neighbor labels
ij.measure.ResultsTable	getNeighborsMedian() Get the median intensity values of the neighbor labels
ij.measure.ResultsTable	getNeighborsMin() Get the minimum intensity values of the neighbor labels
ij.measure.ResultsTable	getNeighborsMode() Get the intensity mode value of the neighbor labels
ij.measure.ResultsTable	getNeighborsSkewness() Get the intensity skewness values of the neighbor labels
ij.measure.ResultsTable	getNeighborsStdDev() Get the standard deviation of the intensity values of the neighbor labels
ij.measure.ResultsTable	getSkewness() Get skewness voxel values per label
ij.measure.ResultsTable	getStdDev() Get standard deviation of voxel values per label

Methods inherited from class inra.ijpb.measure.LabeledVoxelsMeasure

getNumberOfVoxels, getSumOfVoxels, getVolume

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IntensityMeasures

public IntensityMeasures(ij.ImagePlus inputImage,
                         ij.ImagePlus labelImage)

Initialize the measurements by reading the input (grayscale) image and its corresponding labels.

Parameters:

inputImage - input (grayscale) image

labelImage - label image (labels are positive integer values)

Method Detail

getMean

public ij.measure.ResultsTable getMean()

Get mean voxel values per label

Returns:

result table with mean values per label

getNeighborsMean

public ij.measure.ResultsTable getNeighborsMean()

Get the mean intensity values of the neighbor labels

Returns:

result table with mean values of neighbor labels

getMedian

public ij.measure.ResultsTable getMedian()

Get median voxel values per label

Returns:

result table with median values per label

getNeighborsMedian

public ij.measure.ResultsTable getNeighborsMedian()

Get the median intensity values of the neighbor labels

Returns:

result table with median values of neighbor labels

getMode

public ij.measure.ResultsTable getMode()

Get mode voxel values per label

Returns:

result table with mode values per label

getNeighborsMode

public ij.measure.ResultsTable getNeighborsMode()

Get the intensity mode value of the neighbor labels

Returns:

result table with intensity mode of neighbor labels

getSkewness

public ij.measure.ResultsTable getSkewness()

Get skewness voxel values per label

Returns:

result table with skewness values per label

getNeighborsSkewness

public ij.measure.ResultsTable getNeighborsSkewness()

Get the intensity skewness values of the neighbor labels

Returns:

result table with intensity skewness of neighbor labels

getKurtosis

public ij.measure.ResultsTable getKurtosis()

Get kurtosis voxel values per label

Returns:

result table with kurtosis values per label

getNeighborsKurtosis

public ij.measure.ResultsTable getNeighborsKurtosis()

Get the intensity kurtosis values of the neighbor labels

Returns:

result table with intensity kurtosis of neighbor labels

getStdDev

public ij.measure.ResultsTable getStdDev()

Get standard deviation of voxel values per label

Returns:

result table with standard deviation values per label

getNeighborsStdDev

public ij.measure.ResultsTable getNeighborsStdDev()

Get the standard deviation of the intensity values of the neighbor labels

Returns:

result table with standard deviation values of neighbor labels

getMax

public ij.measure.ResultsTable getMax()

Get maximum voxel values per label

Returns:

result table with maximum values per label

getNeighborsMax

public ij.measure.ResultsTable getNeighborsMax()

Get the maximum intensity values of the neighbor labels

Returns:

result table with maximum values of neighbor labels

getMin

public ij.measure.ResultsTable getMin()

Get minimum voxel values per label

Returns:

result table with minimum values per label

getNeighborsMin

public ij.measure.ResultsTable getNeighborsMin()

Get the minimum intensity values of the neighbor labels

Returns:

result table with minimum values of neighbor labels