inra.ijpb.plugins

Class AnalyzeRegions

java.lang.Object

inra.ijpb.plugins.AnalyzeRegions

All Implemented Interfaces:

ij.plugin.filter.PlugInFilter

public class AnalyzeRegions
extends Object
implements ij.plugin.filter.PlugInFilter

Plugin for computing morphological feature of regions from label images. Can be used programmatically:

 // creates a new Features instance to select the features to compute.  
 AnalyzeRegions.Features features = new AnalyzeRegions.Features();
 features.setAll(false);
 features.area = true;
 features.perimeter = true;
 features.centroid = true;
 // compute the features, and returns the corresponding table
 ResultsTable table = AnalyzeRegions.process(imagePlus, features);
 table.show(imagePlus.getShortTitle() + "-Morphometry");
 

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	AnalyzeRegions.Features The list of features to compute.

Field Summary

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, NO_UNDO_RESET, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor and Description
AnalyzeRegions()

Method Summary

Modifier and Type	Method and Description
ij.measure.ResultsTable	process(ij.ImagePlus imagePlus) Deprecated. replaced by static process(ImagePlus, Features) method
static ij.measure.ResultsTable	process(ij.ImagePlus imagePlus, AnalyzeRegions.Features features) Computes a set of descriptive features from a label image and concatenates the results into a ResultsTable.
void	run(ij.process.ImageProcessor ip)
int	setup(String arg, ij.ImagePlus imp)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnalyzeRegions

public AnalyzeRegions()

Method Detail

process

public static final ij.measure.ResultsTable process(ij.ImagePlus imagePlus,
                                                    AnalyzeRegions.Features features)

Computes a set of descriptive features from a label image and concatenates the results into a ResultsTable.

Parameters:

imagePlus - the image to analyze.

features - the features to compute.

Returns:

the results of the analysis as a Results Table

setup

public int setup(String arg,
                 ij.ImagePlus imp)

Specified by:

setup in interface ij.plugin.filter.PlugInFilter

run

public void run(ij.process.ImageProcessor ip)

Specified by:

run in interface ij.plugin.filter.PlugInFilter

process

@Deprecated
public ij.measure.ResultsTable process(ij.ImagePlus imagePlus)

Deprecated. replaced by static process(ImagePlus, Features) method

Process the input image.

Parameters:

imagePlus - the image to process

Returns:

a ResultsTable summarizing the features