public class Watershed extends Object
Constructor and Description |
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Watershed() |
Modifier and Type | Method and Description |
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static ij.ImagePlus |
computeWatershed(ij.ImagePlus input,
ij.ImagePlus marker,
ij.ImagePlus binaryMask,
int connectivity,
boolean getDams)
Compute watershed with markers with an optional binary mask
to restrict the regions of application.
|
static ij.ImagePlus |
computeWatershed(ij.ImagePlus input,
ij.ImagePlus marker,
ij.ImagePlus binaryMask,
int connectivity,
boolean getDams,
boolean verbose)
Compute watershed with markers with an optional binary mask
to restrict the regions of application.
|
static ij.ImagePlus |
computeWatershed(ij.ImagePlus input,
ij.ImagePlus marker,
ij.ImagePlus binaryMask,
int connectivity,
boolean getDams,
double compactness,
boolean verbose)
Compute watershed with markers with an optional binary mask
to restrict the regions of application.
|
static ij.ImagePlus |
computeWatershed(ij.ImagePlus input,
ij.ImagePlus mask,
int connectivity)
Compute fast watershed using flooding simulations, as described by
Soille, Pierre, and Luc M.
|
static ij.ImagePlus |
computeWatershed(ij.ImagePlus input,
ij.ImagePlus marker,
int connectivity,
boolean getDams)
Compute watershed with markers.
|
static ij.ImagePlus |
computeWatershed(ij.ImagePlus input,
ij.ImagePlus marker,
int connectivity,
boolean getDams,
boolean verbose)
Compute watershed with markers
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static ij.ImagePlus |
computeWatershed(ij.ImagePlus input,
ij.ImagePlus mask,
int connectivity,
double hMin,
double hMax)
Compute fast watershed using flooding simulations, as described by
Soille, Pierre, and Luc M.
|
static ij.ImagePlus |
computeWatershed(ij.ImagePlus input,
ij.ImagePlus mask,
int connectivity,
double hMin,
double hMax,
boolean verbose)
Compute fast watershed using flooding simulations, as described by
Soille, Pierre, and Luc M.
|
static ij.process.ImageProcessor |
computeWatershed(ij.process.ImageProcessor input,
ij.process.ImageProcessor mask,
boolean verbose,
int connectivity)
Compute fast watershed using flooding simulations, as described by
Soille, Pierre, and Luc M.
|
static ij.process.ImageProcessor |
computeWatershed(ij.process.ImageProcessor input,
ij.process.ImageProcessor marker,
ij.process.ImageProcessor binaryMask,
int connectivity,
boolean getDams)
Compute watershed with markers with an optional binary mask
to restrict the regions of application.
|
static ij.process.ImageProcessor |
computeWatershed(ij.process.ImageProcessor input,
ij.process.ImageProcessor marker,
ij.process.ImageProcessor binaryMask,
int connectivity,
boolean getDams,
boolean verbose)
Compute watershed with markers with an optional binary mask
to restrict the regions of application.
|
static ij.process.ImageProcessor |
computeWatershed(ij.process.ImageProcessor input,
ij.process.ImageProcessor mask,
int connectivity)
Compute fast watershed using flooding simulations, as described by
Soille, Pierre, and Luc M.
|
static ij.process.ImageProcessor |
computeWatershed(ij.process.ImageProcessor input,
ij.process.ImageProcessor marker,
int connectivity,
boolean getDams)
Compute watershed with markers.
|
static ij.process.ImageProcessor |
computeWatershed(ij.process.ImageProcessor input,
ij.process.ImageProcessor marker,
int connectivity,
boolean getDams,
boolean verbose)
Compute watershed with markers.
|
static ij.ImageStack |
computeWatershed(ij.ImageStack input,
ij.ImageStack mask,
boolean verbose,
int connectivity)
Compute fast watershed using flooding simulations, as described by
Soille, Pierre, and Luc M.
|
static ij.ImageStack |
computeWatershed(ij.ImageStack input,
ij.ImageStack marker,
ij.ImageStack binaryMask,
int connectivity,
boolean getDams)
Compute watershed with markers with an optional binary mask
to restrict the regions of application.
|
static ij.ImageStack |
computeWatershed(ij.ImageStack input,
ij.ImageStack marker,
ij.ImageStack binaryMask,
int connectivity,
boolean getDams,
boolean verbose)
Compute watershed with markers with an optional binary mask
to restrict the regions of application
|
static ij.ImageStack |
computeWatershed(ij.ImageStack input,
ij.ImageStack mask,
int connectivity)
Compute fast watershed using flooding simulations, as described by
Soille, Pierre, and Luc M.
|
static ij.ImageStack |
computeWatershed(ij.ImageStack input,
ij.ImageStack marker,
int connectivity,
boolean getDams)
Compute watershed with markers.
|
static ij.ImageStack |
computeWatershed(ij.ImageStack input,
ij.ImageStack marker,
int connectivity,
boolean getDams,
boolean verbose)
Compute watershed with markers.
|
public static ij.ImagePlus computeWatershed(ij.ImagePlus input, ij.ImagePlus mask, int connectivity)
input
- original grayscale image (usually a gradient image)mask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoodspublic static ij.ImagePlus computeWatershed(ij.ImagePlus input, ij.ImagePlus mask, int connectivity, double hMin, double hMax)
input
- original grayscale image (usually a gradient image)mask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoodshMin
- the minimum value for dynamichMax
- the maximum value for dynamicpublic static ij.ImagePlus computeWatershed(ij.ImagePlus input, ij.ImagePlus mask, int connectivity, double hMin, double hMax, boolean verbose)
input
- original grayscale image (usually a gradient image)mask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoodshMin
- the minimum value for dynamichMax
- the maximum value for dynamicverbose
- flag to output step messages in Log windowpublic static ij.ImageStack computeWatershed(ij.ImageStack input, ij.ImageStack mask, boolean verbose, int connectivity)
input
- original grayscale image (usually a gradient image)mask
- binary mask to restrict the regions of interestverbose
- flag to output step messages in Log windowconnectivity
- voxel connectivity to define neighborhoodspublic static ij.ImageStack computeWatershed(ij.ImageStack input, ij.ImageStack mask, int connectivity)
input
- original grayscale image (usually a gradient image)mask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoodspublic static ij.process.ImageProcessor computeWatershed(ij.process.ImageProcessor input, ij.process.ImageProcessor mask, boolean verbose, int connectivity)
input
- original grayscale image (usually a gradient image)mask
- binary mask to restrict the regions of interestverbose
- flag to output step messages in Log windowconnectivity
- pixel connectivity to define neighborhoods (4 or 8)public static ij.process.ImageProcessor computeWatershed(ij.process.ImageProcessor input, ij.process.ImageProcessor mask, int connectivity)
input
- original grayscale image (usually a gradient image)mask
- binary mask to restrict the regions of interestconnectivity
- pixel connectivity to define neighborhoods (4 or 8)public static ij.ImagePlus computeWatershed(ij.ImagePlus input, ij.ImagePlus marker, ij.ImagePlus binaryMask, int connectivity, boolean getDams)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersbinaryMask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoods (4 or 8 for 2D, 6 or 26 for 3D)getDams
- select/deselect the calculation of damspublic static ij.ImagePlus computeWatershed(ij.ImagePlus input, ij.ImagePlus marker, ij.ImagePlus binaryMask, int connectivity, boolean getDams, boolean verbose)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersbinaryMask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoods (4 or 8 for 2D, 6 or 26 for 3D)getDams
- select/deselect the calculation of damsverbose
- flag to display messages in the log windowpublic static ij.ImagePlus computeWatershed(ij.ImagePlus input, ij.ImagePlus marker, ij.ImagePlus binaryMask, int connectivity, boolean getDams, double compactness, boolean verbose)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersbinaryMask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoods (4 or 8 for 2D, 6 or 26 for 3D)getDams
- select/deselect the calculation of damscompactness
- compactness constrain parameter (values larger than 0 involve using compact watershed)verbose
- flag to display messages in the log windowpublic static ij.ImageStack computeWatershed(ij.ImageStack input, ij.ImageStack marker, ij.ImageStack binaryMask, int connectivity, boolean getDams)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersbinaryMask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoodsgetDams
- select/deselect the calculation of damspublic static ij.ImageStack computeWatershed(ij.ImageStack input, ij.ImageStack marker, ij.ImageStack binaryMask, int connectivity, boolean getDams, boolean verbose)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersbinaryMask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoodsgetDams
- select/deselect the calculation of damsverbose
- flag to display messages in the log windowpublic static ij.process.ImageProcessor computeWatershed(ij.process.ImageProcessor input, ij.process.ImageProcessor marker, ij.process.ImageProcessor binaryMask, int connectivity, boolean getDams)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersbinaryMask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoodsgetDams
- select/deselect the calculation of damspublic static ij.process.ImageProcessor computeWatershed(ij.process.ImageProcessor input, ij.process.ImageProcessor marker, ij.process.ImageProcessor binaryMask, int connectivity, boolean getDams, boolean verbose)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersbinaryMask
- binary mask to restrict the regions of interestconnectivity
- voxel connectivity to define neighborhoodsgetDams
- select/deselect the calculation of damsverbose
- flag to display log messagespublic static ij.ImagePlus computeWatershed(ij.ImagePlus input, ij.ImagePlus marker, int connectivity, boolean getDams, boolean verbose)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersconnectivity
- voxel connectivity to define neighborhoodsgetDams
- select/deselect the calculation of damsverbose
- flag to output step messages in Log window.public static ij.ImagePlus computeWatershed(ij.ImagePlus input, ij.ImagePlus marker, int connectivity, boolean getDams)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersconnectivity
- voxel connectivity to define neighborhoodsgetDams
- select/deselect the calculation of damspublic static ij.ImageStack computeWatershed(ij.ImageStack input, ij.ImageStack marker, int connectivity, boolean getDams, boolean verbose)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersconnectivity
- voxel connectivity to define neighborhoodsgetDams
- select/deselect the calculation of damsverbose
- flag to output step message in the Log windowpublic static ij.ImageStack computeWatershed(ij.ImageStack input, ij.ImageStack marker, int connectivity, boolean getDams)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersconnectivity
- voxel connectivity to define neighborhoodsgetDams
- select/deselect the calculation of damspublic static ij.process.ImageProcessor computeWatershed(ij.process.ImageProcessor input, ij.process.ImageProcessor marker, int connectivity, boolean getDams, boolean verbose)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersconnectivity
- voxel connectivity to define neighborhoodsgetDams
- select/deselect the calculation of damsverbose
- flag to output step messages in the Low windowpublic static ij.process.ImageProcessor computeWatershed(ij.process.ImageProcessor input, ij.process.ImageProcessor marker, int connectivity, boolean getDams)
input
- original grayscale image (usually a gradient image)marker
- image with labeled markersconnectivity
- voxel connectivity to define neighborhoodsgetDams
- select/deselect the calculation of damsCopyright © 2014–2023 INRA-IJPB Modeling and Digital Imaging lab. All rights reserved.