inra.ijpb.morphology

Class GeodesicReconstruction3D

java.lang.Object

inra.ijpb.morphology.GeodesicReconstruction3D

Deprecated.

replaced by the Reconstruction class (2017.07.25)

@Deprecated
public abstract class GeodesicReconstruction3D
extends Object

Morphological reconstruction for 8-bits grayscale or binary stacks.

Author:

David Legland

See Also:

Reconstruction

Method Summary

Modifier and Type	Method and Description
static ij.ImageStack	fillHoles(ij.ImageStack image) Deprecated. Fills the holes in the input image, by (1) inverting the image, (2) performing a geodesic reconstruction initialized with inverted image boundary and (3) by inverting the result.
static ij.ImageStack	killBorders(ij.ImageStack image) Deprecated. Removes the border of the input image, by performing a geodesic reconstruction initialized with image boundary.
static ij.ImageStack	reconstructByDilation(ij.ImageStack marker, ij.ImageStack mask) Deprecated. Static method to computes the geodesic reconstruction by dilation of the marker image under the mask image.
static ij.ImageStack	reconstructByDilation(ij.ImageStack marker, ij.ImageStack mask, int connectivity) Deprecated. Static method to computes the geodesic reconstruction by dilation of the marker image under the mask image.
static ij.ImageStack	reconstructByDilation(ij.ImageStack marker, ij.ImageStack mask, int connectivity, ij.ImageStack binaryMask) Deprecated. Static method to computes the geodesic reconstruction by dilation of the marker image under the mask image, but restricted to a binary mask.
static ij.ImageStack	reconstructByErosion(ij.ImageStack marker, ij.ImageStack mask) Deprecated. Static method to computes the geodesic reconstruction by erosion of the marker image over the mask image.
static ij.ImageStack	reconstructByErosion(ij.ImageStack marker, ij.ImageStack mask, int connectivity) Deprecated. Static method to computes the geodesic reconstruction by erosion of the marker image over the mask image.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

killBorders

public static final ij.ImageStack killBorders(ij.ImageStack image)

Deprecated.

Removes the border of the input image, by performing a geodesic reconstruction initialized with image boundary.

Parameters:

image - the image to process

Returns:

a new image with borders removed

See Also:

fillHoles(ImageStack)

fillHoles

public static final ij.ImageStack fillHoles(ij.ImageStack image)

Deprecated.

Fills the holes in the input image, by (1) inverting the image, (2) performing a geodesic reconstruction initialized with inverted image boundary and (3) by inverting the result.

Parameters:

image - the image to process

Returns:

a new image with holes filled

See Also:

killBorders(ImageStack)

reconstructByDilation

public static final ij.ImageStack reconstructByDilation(ij.ImageStack marker,
                                                        ij.ImageStack mask)

Deprecated.

Static method to computes the geodesic reconstruction by dilation of the marker image under the mask image.

Parameters:

marker - input marker image

mask - mask image

Returns:

the result of 3D geodesic reconstruction

reconstructByDilation

public static final ij.ImageStack reconstructByDilation(ij.ImageStack marker,
                                                        ij.ImageStack mask,
                                                        int connectivity)

Deprecated.

Static method to computes the geodesic reconstruction by dilation of the marker image under the mask image.

Parameters:

marker - input marker image

mask - mask image

connectivity - 3d connectivity (6 or 26)

Returns:

the result of 3D geodesic reconstruction

reconstructByDilation

public static final ij.ImageStack reconstructByDilation(ij.ImageStack marker,
                                                        ij.ImageStack mask,
                                                        int connectivity,
                                                        ij.ImageStack binaryMask)

Deprecated.

Static method to computes the geodesic reconstruction by dilation of the marker image under the mask image, but restricted to a binary mask.

Parameters:

marker - input marker image

mask - mask image

connectivity - 3d connectivity (6 or 26)

binaryMask - binary mask to restrict area of application

Returns:

geodesic reconstruction by dilation of input image

reconstructByErosion

public static final ij.ImageStack reconstructByErosion(ij.ImageStack marker,
                                                       ij.ImageStack mask)

Deprecated.

Static method to computes the geodesic reconstruction by erosion of the marker image over the mask image.

Parameters:

marker - input marker image

mask - mask image

Returns:

the result of 3D geodesic reconstruction

reconstructByErosion

public static final ij.ImageStack reconstructByErosion(ij.ImageStack marker,
                                                       ij.ImageStack mask,
                                                       int connectivity)

Deprecated.

Static method to computes the geodesic reconstruction by erosion of the marker image over the mask image.

Parameters:

marker - input marker image

mask - mask image

connectivity - 3d connectivity (6 or 26)

Returns:

the result of 3D geodesic reconstruction